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71_003_scaffold_20

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Displaying items 1-30 of 103 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_20_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..469
DNA (468bp) protein (156aa)
gpi; glucose-6-phosphate isomerase (EC:5.3.1.9); K01810 glucose-6-phosphate isomerase [EC:5.3.1.9]
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Glucose-6-phosphate isomerase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZQ1_BIFBP
71_003_scaffold_20_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

962..2104
DNA (1143bp) protein (381aa)
Uncharacterized protein n=6 Tax=Bifidobacterium bifidum RepID=E4V7X5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ97553.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_20_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2110..3108
DNA (999bp) protein (333aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WGB8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42442.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_20_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3120..4238
DNA (1119bp) protein (373aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WGB9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52571.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_20_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4622..5116
DNA (495bp) protein (165aa)
Uncharacterized protein n=7 Tax=Bifidobacterium bifidum RepID=I3WGC1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42444.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_20_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5126..5860)
DNA (735bp) protein (245aa)
Magnesium transporter protein, ATPase subunit n=6 Tax=Bifidobacterium bifidum RepID=E3EPN6_BIFBS
Mg(2+) transport ATPase protein C; K07507 putative Mg2+ transporter-C (MgtC) family protein
Magnesium transporter protein, ATPase subunit {ECO:0000313|EMBL:ADO52573.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_20_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5990..8431)
DNA (2442bp) protein (814aa)
ctpE; cation-transporting P-type ATPase CtpE (EC:3.6.3.2); K01531 Mg2+-importing ATPase [EC:3.6.3.2]
CtpE Cation-transporting P-type ATPase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZQ7_BIFBP
Cation transport ATPase {ECO:0000313|EMBL:EKE51527.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_003_scaffold_20_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8428..8622)
DNA (195bp) protein (65aa)
mgtA; cation transport ATPase (EC:3.6.3.2)
Magnesium-translocating P-type ATPase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCS5_9BIFI
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:CDB22155.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_20_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8710..10209)
DNA (1500bp) protein (500aa)
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BVQ7_BIFBI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI82269.1}; Nitrate ABC transporter ATP-binding component {ECO:0000313|EMBL:BAQ97563.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
abcT; ABC transporter ATP-binding protein
71_003_scaffold_20_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10335..12116)
DNA (1782bp) protein (594aa)
Putative aliphatic sulfonates transport permease n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGC5_BIFBI
ssuC; putative aliphatic sulfonates transport permease
Putative aliphatic sulfonates transport permease {ECO:0000313|EMBL:AFL03938.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_20_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12924..13892)
DNA (969bp) protein (323aa)
DeoR family transcriptional regulator n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZR1_BIFBP
family transcriptional regulator DeoR
DeoR family transcriptional regulator {ECO:0000313|EMBL:KFI42449.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_20_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14241..15503
DNA (1263bp) protein (421aa)
Galactitol permease IIC component n=4 Tax=Bifidobacterium RepID=I3WGC7_BIFBI
galactitol permease IIC component
Putative PTS system galactitol-specific IIC component {ECO:0000313|EMBL:CDB22150.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_20_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15546..17069
DNA (1524bp) protein (508aa)
L-xylulose/3-keto-L-gulonate kinase (EC:2.7.1.53); K00880 L-xylulokinase [EC:2.7.1.53]
Putative L-xylulose/3-keto-L-gulonate kinase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7Y7_BIFBI
Putative L-xylulose/3-keto-L-gulonate kinase {ECO:0000313|EMBL:EFR49729.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_003_scaffold_20_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17071..17961
DNA (891bp) protein (297aa)
ulaE; L-ribulose-5-phosphate 3-epimerase (EC:5.1.3.22); K03079 L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
UlaE L-ribulose-5-phosphate 3-epimerase n=4 Tax=Bifidobacterium bifidum RepID=E4NZR4_BIFBP
L-xylulose 5-phosphate 3-epimerase {ECO:0000313|EMBL:EKF16097.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_20_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18053..18745
DNA (693bp) protein (231aa)
rpe; L-ribulose-5-phosphate 4-epimerase; K01786 L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
L-ribulose-5-phosphate 4-epimerase n=4 Tax=Bifidobacterium RepID=E3EPP5_BIFBS
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:ADO52582.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_20_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


19208..19585
DNA (378bp) protein (126aa)
50S ribosomal protein L19 n=8 Tax=Bifidobacterium RepID=E3EPP6_BIFBS
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_20_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19706..20521
DNA (816bp) protein (272aa)
lepB; signal peptidase I LepB (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
LepB Signal peptidase I n=2 Tax=Bifidobacterium bifidum RepID=E4NZR7_BIFBP
71_003_scaffold_20_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20540..21241
DNA (702bp) protein (234aa)
rnhB; ribonuclease HII RnhB (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4]
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Ribonuclease n=6 Tax=Bifidobacterium RepID=E3EPP8_BIFBS
71_003_scaffold_20_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21555..22634
DNA (1080bp) protein (360aa)
Lactose operon repressor n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MD03_BIFBI
Lactose operon repressor {ECO:0000313|EMBL:EKF15187.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
lacI; lactose operon repressor
71_003_scaffold_20_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23078..25021)
DNA (1944bp) protein (648aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3); K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Long-chain-fatty-acid--CoA ligase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I9E1_BIFBI
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EKE51539.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_003_scaffold_20_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25461..26336
DNA (876bp) protein (292aa)
pdxS; pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-]
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Pyridoxal biosynthesis lyase PdxS n=7 Tax=Bifidobacterium RepID=E3EPQ1_BIFBS
71_003_scaffold_20_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26653..27273
DNA (621bp) protein (207aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
pdxT; glutamine amidotransferase subunit PdxT; K08681 glutamine amidotransferase [EC:2.6.-.-]
Glutamine amidotransferase subunit PdxT n=2 Tax=Bifidobacterium bifidum RepID=E4V7Z7_BIFBI
71_003_scaffold_20_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27249..27338)
DNA (90bp) protein (30aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6G9M6_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22138.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_20_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27833..28009
DNA (177bp) protein (59aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=I3WGD9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42461.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_20_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28029..29045
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRE8_BIFBI
Glycosyl hydrolase {ECO:0000313|EMBL:BAQ97578.1}; Uncharacterized protein {ECO:0000313|EMBL:ERI82291.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
endo-1,4-beta-xylanase
71_003_scaffold_20_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28991..29554
DNA (564bp) protein (188aa)
Endo-1,4-beta-xylanase, non-functional product n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZS3_BIFBP
endo-1,4-beta-xylanase, non-functional product
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EFR49741.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_003_scaffold_20_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29614..30726
DNA (1113bp) protein (371aa)
HTH-type transcriptional repressor n=2 Tax=Bifidobacterium bifidum RepID=I3WGE2_BIFBI
cytR; HTH-type transcriptional repressor
HTH-type transcriptional repressor {ECO:0000313|EMBL:AFL03955.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_20_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31394..32278
DNA (885bp) protein (295aa)
Aldo/keto diketogulonate reductase n=7 Tax=Bifidobacterium RepID=E3EPQ7_BIFBS
Aldo/keto diketogulonate reductase
Putative 2,5-diketo-D-gluconic acid reductase A {ECO:0000313|EMBL:ERI82294.1}; Putative reductase {ECO:0000313|EMBL:BAQ97581.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_20_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32456..33133
DNA (678bp) protein (226aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=I3WGE5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI82297.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_20_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33288..34592
DNA (1305bp) protein (435aa)
Putative manganese transport protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGE6_BIFBI
mntH; putative manganese transport protein
Putative manganese transport protein {ECO:0000313|EMBL:AFL03959.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Displaying items 1-30 of 103 in total

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