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71_003_scaffold_43

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Displaying items 1-30 of 118 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_43_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..1189
DNA (1188bp) protein (396aa)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase {ECO:0000313|EMBL:EFR49603.1}; EC=2.4.1.211 {ECO:0000313|EMBL:EFR49603.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
lnbP; lacto-N-biose phorylase; K15533 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase [EC:2.4.1.211]
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7L1_BIFBI
71_003_scaffold_43_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1414..1803
DNA (390bp) protein (130aa)
Psp Translation initiation inhibitor n=8 Tax=Bifidobacterium RepID=E4NYY9_BIFBP
plastid-lipid associated protein
Psp Translation initiation inhibitor {ECO:0000313|EMBL:CDB23239.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_43_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2380..3459
DNA (1080bp) protein (360aa)
gde; glycerophosphodiester phosphodiesterase (EC:3.1.4.44)
Glycerophosphodiester phosphodiesterase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M463_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97448.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_43_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3484..5325
DNA (1842bp) protein (614aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase n=2 Tax=Bifidobacterium bifidum RepID=E4V7L5_BIFBI
71_003_scaffold_43_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5491..7119
DNA (1629bp) protein (543aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
diaminopimelate decarboxylase n=1 Tax=Bifidobacterium bifidum RepID=UPI0002D8996B
71_003_scaffold_43_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7235..7741)
DNA (507bp) protein (169aa)
exp5; PTS system glucose-specific transporter subunit IICBA (EC:2.7.1.69)
PTS system, glucose-specific IIA component n=4 Tax=Bifidobacterium RepID=E3ELS1_BIFBS
PTS system, glucose-specific IIA component {ECO:0000313|EMBL:ADO52466.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_43_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7738..9288)
DNA (1551bp) protein (517aa)
nagE; PTS system N-acetylglucosamine-specific transporter subunit IICBA (EC:2.7.1.69)
PTS system, N-acetylglucosamine-specific IIC subunit n=7 Tax=Bifidobacterium RepID=E3ELS2_BIFBS
PTS system N-acetylglucosamine-specific transporter subunit IICBA {ECO:0000313|EMBL:EKF15861.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_43_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9764..11077
DNA (1314bp) protein (438aa)
hom; Homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Homoserine dehydrogenase n=3 Tax=Bifidobacterium RepID=E3ELS3_BIFBS
71_003_scaffold_43_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11224..12222
DNA (999bp) protein (333aa)
thrB; homoserine kinase (EC:2.7.1.39)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Homoserine kinase n=3 Tax=Bifidobacterium bifidum RepID=E3ELS4_BIFBS
71_003_scaffold_43_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12335..13771
DNA (1437bp) protein (479aa)
Maf-like protein BBIF_0265 n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HA47_9BIFI
Maf-like protein BBIF_0265 {ECO:0000313|EMBL:CDB23067.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Maf-like protein; K06287 septum formation protein
71_003_scaffold_43_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13775..14155)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYZ8_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23068.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_43_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14155..14538)
DNA (384bp) protein (128aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=U2DS98_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82616.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_003_scaffold_43_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14734..15771
DNA (1038bp) protein (346aa)
ABC transporter ATP-binding protein (EC:3.6.3.28); K02003 putative ABC transport system ATP-binding protein
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZ00_BIFBP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR49615.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_003_scaffold_43_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15768..17222
DNA (1455bp) protein (485aa)
Transporter n=8 Tax=Bifidobacterium RepID=E4NZ01_BIFBP
transporter
Transporter {ECO:0000313|EMBL:CDB23071.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_43_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17298..18221)
DNA (924bp) protein (308aa)
Transporter n=6 Tax=Bifidobacterium RepID=E4NZ02_BIFBP
transporter; K07088
Transporter, auxin efflux carrier family protein {ECO:0000313|EMBL:ERI82613.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97461.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_43_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18483..19715
DNA (1233bp) protein (411aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:EFR49618.1}; EC=3.5.1.18 {ECO:0000313|EMBL:EFR49618.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
dapE; succinyl-diaminopimelate desuccinylase DapE (EC:3.5.1.18); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I9A4_BIFBI
71_003_scaffold_43_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19787..19948)
DNA (162bp) protein (54aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GN43_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ERI82611.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_003_scaffold_43_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20159..23062
DNA (2904bp) protein (968aa)
rne; ribonuclease G (EC:3.1.26.12); K08300 ribonuclease E [EC:3.1.26.12]
ribonuclease G n=1 Tax=Bifidobacterium bifidum RepID=UPI00037FB66F
S1 RNA binding domain protein {ECO:0000313|EMBL:ERI82610.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_43_19
unknown

Not on your lists


23229..23351
DNA (123bp) protein (41aa)
Suspect SCG annotation. See neighboring gene [71_003_scaffold_43_20].
rplU; 50S ribosomal protein L21P; K02888 large subunit ribosomal protein L21
71_003_scaffold_43_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


23333..23521
DNA (189bp) protein (63aa)
50S ribosomal protein L21 n=8 Tax=Bifidobacterium RepID=E3ELT3_BIFBS
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_43_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


23546..23797
DNA (252bp) protein (84aa)
50S ribosomal protein L27 n=8 Tax=Bifidobacterium RepID=E3ELT4_BIFBS
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_43_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24248..25351)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GN47_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23079.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_003_scaffold_43_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25774..27459
DNA (1686bp) protein (562aa)
GTPase Obg n=2 Tax=Bifidobacterium bifidum RepID=E4NZ08_BIFBP
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
obgE; GTP-binding protein, GTP1/OBG family ObgE; K03979 GTP-binding protein
71_003_scaffold_43_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27651..28781
DNA (1131bp) protein (377aa)
proB; glutamate 5-kinase ProB (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11]
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Glutamate 5-kinase n=5 Tax=Bifidobacterium RepID=E3ENJ0_BIFBS
71_003_scaffold_43_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28854..30074
DNA (1221bp) protein (407aa)
Aminotransferase n=3 Tax=Bifidobacterium RepID=E3ENJ1_BIFBS
Putative aspartate transaminase {ECO:0000313|EMBL:ERI82672.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
aspC1; aminotransferase
71_003_scaffold_43_trna_1
unknown

Not on your lists

30255..30327
DNA (73bp)
transferRNA Trp
71_003_scaffold_43_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30363..30590
DNA (228bp) protein (76aa)
Protein translocase subunit SecE n=6 Tax=Bifidobacterium RepID=E3ENJ2_BIFBS
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_43_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30620..31462
DNA (843bp) protein (281aa)
Transcription termination/antitermination protein NusG n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7N5_BIFBI
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
nusG; transcription antitermination factor NusG; K02601 transcriptional antiterminator NusG
71_003_scaffold_43_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31567..32451
DNA (885bp) protein (295aa)
Phospholipid/glycerol acyltransferase n=6 Tax=Bifidobacterium RepID=E3ENJ4_BIFBS
phospholipid/glycerol acyltransferase
PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:KFI42365.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_43_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32572..33567
DNA (996bp) protein (332aa)
gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)(+)); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=4 Tax=Bifidobacterium bifidum RepID=E3ENJ5_BIFBS
Displaying items 1-30 of 118 in total

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