ggKbase home page

71_003_scaffold_47

Search features with annotation key words

Displaying items 1-30 of 249 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_47_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

143..394
DNA (252bp) protein (84aa)
Uncharacterized protein n=6 Tax=Bifidobacterium bifidum RepID=I3WKI1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI44105.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_47_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(568..1296)
DNA (729bp) protein (243aa)
Nitroreductase family protein n=2 Tax=Bifidobacterium bifidum RepID=E3ERE6_BIFBS
nfrA; NADPH-dependent oxidoreductase
Nitroreductase family protein {ECO:0000313|EMBL:EKE50066.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_003_scaffold_47_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1554..2006)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKH9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL05392.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_47_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2055..2744
DNA (690bp) protein (230aa)
Phosphoglycerate mutase family protein n=5 Tax=Bifidobacterium RepID=E3ERE4_BIFBS
phoE; putative phosphoglycerate mutase
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:ADO53948.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_47_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3045..4067)
DNA (1023bp) protein (341aa)
HTH-type transcriptional regulator n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKH5_BIFBI
regA; HTH-type transcriptional regulator
HTH-type transcriptional regulator {ECO:0000313|EMBL:AFL05388.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_47_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4400..6532
DNA (2133bp) protein (711aa)
alkaline phosphatase; K01077 alkaline phosphatase [EC:3.1.3.1]
Alkaline phosphatase {ECO:0000313|EMBL:KFI44099.1}; EC=3.1.3.1 {ECO:0000313|EMBL:KFI44099.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
alkaline phosphatase n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976FEA
71_003_scaffold_47_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6910..8793
DNA (1884bp) protein (628aa)
Chaperone protein DnaK n=7 Tax=Bifidobacterium bifidum RepID=E3ERE0_BIFBS
dnaK; chaperone protein
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_47_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8796..9500
DNA (705bp) protein (235aa)
Protein GrpE n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0G2_BIFBP
grpE; molecular chaperone GrpE; K03687 molecular chaperone GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_47_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9960..10967
DNA (1008bp) protein (336aa)
DnaJ domain protein n=4 Tax=Bifidobacterium bifidum RepID=E4VAZ8_BIFBI
dnaJ1; chaperone protein dnaJ; K03686 molecular chaperone DnaJ
Chaperone protein dnaJ {ECO:0000313|EMBL:EKF15027.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_47_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11061..11573
DNA (513bp) protein (171aa)
Heat shock regulatory protein hspR n=5 Tax=Bifidobacterium RepID=E3ERD6_BIFBS
hspR; putative heat shock protein
HspR heat shock response regulator {ECO:0000313|EMBL:CDB22227.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_47_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11929..14433
DNA (2505bp) protein (835aa)
exo-alpha-sialidase (EC:3.2.1.18); K01186 sialidase-1 [EC:3.2.1.18]
Exo-alpha-sialidase n=2 Tax=Bifidobacterium bifidum RepID=K2HTI4_BIFBI
Exo-alpha-sialidase {ECO:0000313|EMBL:EKE49842.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_003_scaffold_47_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14745..20081
DNA (5337bp) protein (1779aa)
sialidase; K01186 sialidase-1 [EC:3.2.1.18]
Sialidase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HU86_BIFBI
Sialidase {ECO:0000313|EMBL:EKE51073.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_003_scaffold_47_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20314..21099
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQQ3_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53937.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_47_trna_5
unknown

Not on your lists

comp(21313..21385)
DNA (73bp)
transferRNA Ala
71_003_scaffold_47_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21595..22293)
DNA (699bp) protein (233aa)
SNARE-like domain protein n=2 Tax=Bifidobacterium bifidum RepID=E4VB04_BIFBI
Putative membrane-associated protein {ECO:0000313|EMBL:KFI44090.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein; K03975 membrane-associated protein
71_003_scaffold_47_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22563..23549
DNA (987bp) protein (329aa)
Tetrapyrrole (Corrin/Porphyrin) methylase family protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Tetrapyrrole (Corrin/Porphyrin) methylase family protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQQ1_BIFBS
71_003_scaffold_47_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23551..23982)
DNA (432bp) protein (144aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=E4VB06_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI44088.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_47_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24080..24910)
DNA (831bp) protein (277aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WKG3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL05376.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_47_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25060..26922
DNA (1863bp) protein (621aa)
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Methionine--tRNA ligase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0F2_BIFBP
71_003_scaffold_47_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27117..27611
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQP7_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53931.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_47_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28386..28535)
DNA (150bp) protein (50aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=E4VB11_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22237.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_47_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28840..30282
DNA (1443bp) protein (481aa)
Sugar-binding domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DSQ6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI44084.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
71_003_scaffold_47_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30458..31417
DNA (960bp) protein (320aa)
Hydrolase, TatD family n=3 Tax=Bifidobacterium bifidum RepID=E4VB14_BIFBI
Hydrolase, TatD family {ECO:0000313|EMBL:EFR50779.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
tadD; sec-independent protein
71_003_scaffold_47_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31581..34043
DNA (2463bp) protein (821aa)
Probable potassium transport system protein kup n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BX42_BIFBI
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
K+ transporter; K03549 KUP system potassium uptake protein
71_003_scaffold_47_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34624..35205
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Bifidobacterium bifidum RepID=UPI00019770D5
Uncharacterized protein {ECO:0000313|EMBL:CDB22243.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_003_scaffold_47_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35263..36129
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=E3EQP1_BIFBS
hypothetical protein
Putative glutamine amido transferase {ECO:0000313|EMBL:AFL05367.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_47_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36333..37079
DNA (747bp) protein (249aa)
Metal dependent phosphohydrolase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKF3_BIFBI
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:AFL05366.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_47_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37157..38476)
DNA (1320bp) protein (440aa)
sugar ABC transporter (EC:3.6.3.17)
ABC-type sugar transport system n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0E5_BIFBP
Sugar ABC transporter {ECO:0000313|EMBL:EKF15975.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_47_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38473..39906)
DNA (1434bp) protein (478aa)
SalY-type ABC antimicrobial peptide transportsystem permease component n=2 Tax=Bifidobacterium bifidum RepID=K2I864_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI44078.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
SalY-type ABC antimicrobial peptide transportsystem permease component
71_003_scaffold_47_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40387..42552
DNA (2166bp) protein (722aa)
Methyl-accepting chemotaxis protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MVA4_BIFBI
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EKF15973.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
methyl-accepting chemotaxis protein
Displaying items 1-30 of 249 in total

View Taxonomy