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71_003_scaffold_97

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Displaying items 1-30 of 64 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_97_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(171..1223)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2DPC3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83437.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_003_scaffold_97_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1279..1941)
DNA (663bp) protein (221aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=I3WJH2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43787.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_97_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2130..2786
DNA (657bp) protein (219aa)
Response regulator receiver n=6 Tax=Bifidobacterium bifidum RepID=E3EQF9_BIFBS
response regulator
Response regulator receiver {ECO:0000313|EMBL:KFI43786.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_97_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2783..4069
DNA (1287bp) protein (429aa)
histidine-kinase (EC:2.7.13.3)
Putative histidine-kinase {ECO:0000313|EMBL:KFI43785.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KFI43785.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Histidine kinase n=2 Tax=Bifidobacterium bifidum RepID=E3EQF8_BIFBS
71_003_scaffold_97_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4089..5255
DNA (1167bp) protein (389aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DUG9_BIFBI
LacI transcription regulator {ECO:0000313|EMBL:ABE00942.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
71_003_scaffold_97_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5246..5749)
DNA (504bp) protein (168aa)
nagA; N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000313|EMBL:AFL05031.1}; EC=3.5.1.25 {ECO:0000313|EMBL:AFL05031.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
NagA2 N-acetylglucosamine-6-phosphate deacetylase n=4 Tax=Bifidobacterium bifidum RepID=E4NYP2_BIFBP
71_003_scaffold_97_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5768..8923)
DNA (3156bp) protein (1052aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Beta-galactosidase; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
lacZ6; beta-galactosidase (EC:3.2.1.23); K01190 beta-galactosidase [EC:3.2.1.23]
Beta galactosidase small chain n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CHB9_BIFBI
71_003_scaffold_97_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9289..10764
DNA (1476bp) protein (492aa)
Galactoside symporter n=6 Tax=Bifidobacterium RepID=E3EQF4_BIFBS
lacS; galactoside symporter
Lactose permease {ECO:0000313|EMBL:EKF16332.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_97_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11118..12005
DNA (888bp) protein (296aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2CFQ3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43780.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
transcriptional regulator
71_003_scaffold_97_trna_4
unknown

Not on your lists

comp(11952..12023)
DNA (72bp)
transferRNA Glu
71_003_scaffold_97_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12091..13002)
DNA (912bp) protein (304aa)
tRNA (m(7)G46) methyltransferase (EC:2.1.1.33); K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYN8_BIFBP
71_003_scaffold_97_11
Scardovia inopinata, Scardovia, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13196..14116
DNA (921bp) protein (307aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
UDP-glucose 4-epimerase n=2 Tax=Bifidobacterium longum subsp. longum RepID=E8MEY2_BIFL2
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EFG26874.2}; TaxID=641146 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Scardovia.;" source="Scardovia inopinata F0304.;"
71_003_scaffold_97_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14411..15148
DNA (738bp) protein (246aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=K2M5J7_BIFBI
hypothetical protein
Membrane spanning protein {ECO:0000313|EMBL:KFI43777.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_97_trna_1
unknown

Not on your lists

15301..15374
DNA (74bp)
transferRNA Asp
71_003_scaffold_97_trna_2
unknown

Not on your lists

15419..15491
DNA (73bp)
transferRNA Phe
71_003_scaffold_97_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16516..17667
DNA (1152bp) protein (384aa)
fucO; Lactaldehyde reductase; K00048 lactaldehyde reductase [EC:1.1.1.77]
Lactaldehyde reductase n=7 Tax=Bifidobacterium RepID=E3EQE6_BIFBS
Lactaldehyde reductase {ECO:0000313|EMBL:ADO53602.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_97_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17838..18737)
DNA (900bp) protein (300aa)
Glycosyltransferase, group 2 family protein n=4 Tax=Bifidobacterium bifidum RepID=U2DP74_BIFBI
putative glycosyl transferase
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:ERI83382.1}; Putative glycosyltransferase {ECO:0000313|EMBL:BAQ98656.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_97_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18791..20395
DNA (1605bp) protein (535aa)
Conserved hypothetical membrane spanning protein with DUF20 domain n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYN3_BIFBP
hypothetical protein
Conserved hypothetical membrane spanning protein with DUF20 domain {ECO:0000313|EMBL:CDB21884.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_003_scaffold_97_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20395..21618
DNA (1224bp) protein (408aa)
N-acetylglucosaminyltransferase n=7 Tax=Bifidobacterium RepID=E3EQE3_BIFBS
N-acetylglucosaminyltransferase
Biofilm PGA synthesis N-glycosyl transferase {ECO:0000313|EMBL:EKF16335.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_003_scaffold_97_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21757..22686
DNA (930bp) protein (310aa)
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI43772.1}; EC=3.6.3.25 {ECO:0000313|EMBL:KFI43772.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ABC type transport system, ATP-binding protein n=7 Tax=Bifidobacterium bifidum RepID=E3EQE2_BIFBS
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein
71_003_scaffold_97_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22686..24341
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DUC2_BIFBI
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI43771.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
putative integral membrane transport protein
71_003_scaffold_97_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24448..25863
DNA (1416bp) protein (472aa)
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJF2_BIFBI
dacB; D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase {ECO:0000313|EMBL:AFL05015.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_97_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25876..26994
DNA (1119bp) protein (373aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
tRNA(Ile)-lysidine synthase n=2 Tax=Bifidobacterium bifidum RepID=E4VBY9_BIFBI
tilS; tRNA(Ile)-lysidine synthase
71_003_scaffold_97_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26972..27538
DNA (567bp) protein (189aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EFR51105.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EFR51105.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hprT; hypoxanthine-guanine phosphoribosyltransferase HprT (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine-guanine phosphoribosyltransferase n=8 Tax=Bifidobacterium RepID=E3EQD8_BIFBS
71_003_scaffold_97_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27572..29638
DNA (2067bp) protein (689aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
ATP-dependent zinc metalloprotease FtsH n=5 Tax=Bifidobacterium RepID=I3WJE9_BIFBI
ftsH; cell division protease
71_003_scaffold_97_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29779..30345
DNA (567bp) protein (189aa)
folE; GTP cyclohydrolase I; K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
GTP cyclohydrolase 1 n=8 Tax=Bifidobacterium RepID=E3EQD6_BIFBS
71_003_scaffold_97_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30411..31283
DNA (873bp) protein (291aa)
folP; dihydropteroate synthase; K00796 dihydropteroate synthase [EC:2.5.1.15]
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Dihydropteroate synthase n=3 Tax=Bifidobacterium RepID=E3EQD5_BIFBS
71_003_scaffold_97_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31366..32880
DNA (1515bp) protein (505aa)
sulD; dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:4.1.2.25); K13940 dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase {ECO:0000313|EMBL:EFR51109.1}; EC=2.7.6.3 {ECO:0000313|EMBL:EFR51109.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=4 Tax=Bifidobacterium bifidum RepID=E3EQD4_BIFBS
71_003_scaffold_97_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32877..33416
DNA (540bp) protein (180aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=E4VBZ5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83394.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_97_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33919..34863)
DNA (945bp) protein (315aa)
tesB; acyl-CoA thioesterase; K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
Acyl-CoA thioesterase n=4 Tax=Bifidobacterium RepID=K2HA86_BIFBI
Acyl-CoA thioesterase {ECO:0000313|EMBL:CDB21896.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Displaying items 1-30 of 64 in total

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