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71_003_scaffold_137

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Displaying items 1-30 of 38 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_137_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..718
DNA (717bp) protein (239aa)
pyk; Pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Pyruvate kinase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CK05_BIFBI
71_003_scaffold_137_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(920..1519)
DNA (600bp) protein (200aa)
ADP-ribose pyrophosphatase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13]
ADP-ribose pyrophosphatase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQU1_BIFBS
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:ADO52983.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_137_trna_1
unknown

Not on your lists

1744..1817
DNA (74bp)
transferRNA Leu
71_003_scaffold_137_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1927..2703
DNA (777bp) protein (259aa)
Transcriptional regulator n=8 Tax=Bifidobacterium RepID=E3EQU2_BIFBS
amiR; putative two-component system responseregulator
Transcriptional regulator {ECO:0000313|EMBL:ADO52984.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_137_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2700..5531
DNA (2832bp) protein (944aa)
DNA-directed DNA polymerase {ECO:0000313|EMBL:EFR50133.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EFR50133.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
polA; DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7]
DNA-directed DNA polymerase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V941_BIFBI
71_003_scaffold_137_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5588..6505
DNA (918bp) protein (306aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHH7_BIFBI
hypothetical protein
71_003_scaffold_137_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6559..7248
DNA (690bp) protein (230aa)
Hydrolase, NUDIX family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CK00_BIFBI
Hydrolase, NUDIX family {ECO:0000313|EMBL:ERI84388.1}; Putative pyrophosphate-releasing NTPase {ECO:0000313|EMBL:BAQ97957.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
phosphohydrolase
71_003_scaffold_137_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7313..9484
DNA (2172bp) protein (724aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
glgX; glycogen operon protein GlgX (EC:3.2.1.68); K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Glycogen debranching enzyme GlgX n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DS10_BIFBI
71_003_scaffold_137_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9560..10927)
DNA (1368bp) protein (456aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQU7_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADO52989.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_137_trna_2
unknown

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11267..11340
DNA (74bp)
transferRNA Pro
71_003_scaffold_137_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11572..11739
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V946_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82490.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_003_scaffold_137_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12049..12327)
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V947_BIFBI
Acetyltransferase {ECO:0000313|EMBL:KFI42818.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_137_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12376..12615)
DNA (240bp) protein (80aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2DLR5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82487.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
acetyltransferase, GNAT family
71_003_scaffold_137_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12843..13058)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRW2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42820.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter
71_003_scaffold_137_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13175..13612)
DNA (438bp) protein (146aa)
Transcriptional regulator, MarR family n=2 Tax=Bifidobacterium bifidum RepID=E4V949_BIFBI
Transcriptional regulator, MarR family {ECO:0000313|EMBL:KFI42821.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
MarR family transcriptional regulator
71_003_scaffold_137_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13712..14128)
DNA (417bp) protein (139aa)
Putative HTH-type transcriptional regulator AdhR n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BWA2_BIFBI
Putative HTH-type transcriptional regulator AdhR {ECO:0000313|EMBL:KFI42822.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Predicted transcriptional regulators
71_003_scaffold_137_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14294..15154
DNA (861bp) protein (287aa)
Organophosphate reductase {ECO:0000313|EMBL:KFI42823.1}; EC=1.1.1.218 {ECO:0000313|EMBL:KFI42823.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
aldo/keto reductase family (EC:1.1.1.64)
Organophosphate reductase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEN0_BIFBI
71_003_scaffold_137_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15280..15828
DNA (549bp) protein (183aa)
ThiJ/PfpI domain-containing protein; K05520 protease I [EC:3.2.-.-]
Intracellular protease, PfpI family n=2 Tax=Bifidobacterium bifidum RepID=E4V952_BIFBI
Intracellular protease, PfpI family {ECO:0000313|EMBL:ERI82482.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97967.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_003_scaffold_137_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15923..16615)
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V953_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50145.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
71_003_scaffold_137_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16772..17584)
DNA (813bp) protein (271aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V955_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42826.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_137_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18062..18679)
DNA (618bp) protein (206aa)
Peptidase E {ECO:0000313|EMBL:KFI42827.1}; EC=3.4.13.21 {ECO:0000313|EMBL:KFI42827.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Peptidase E n=5 Tax=Bifidobacterium RepID=E3EQU9_BIFBS
putative peptidase
71_003_scaffold_137_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18720..20231
DNA (1512bp) protein (504aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
aroA; 3-phosphoshikimate 1-carboxyvinyl transferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEM7_BIFBI
71_003_scaffold_137_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20345..21574)
DNA (1230bp) protein (410aa)
ack; acetate kinase (EC:2.7.2.1); K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Acetate kinase n=2 Tax=Bifidobacterium bifidum RepID=E3EQV1_BIFBS
71_003_scaffold_137_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21856..24162)
DNA (2307bp) protein (769aa)
pta; phosphate acetyltransferase; K13788 phosphate acetyltransferase [EC:2.3.1.8]
phosphate acetyltransferase n=1 Tax=Bifidobacterium bifidum RepID=UPI00035EE886
Phosphate acetyltransferase {ECO:0000313|EMBL:ADO52994.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_003_scaffold_137_23
Streptococcus equinus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24665..25372)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Streptococcus equinus ATCC 9812 RepID=E8JN44_STREI
Uncharacterized protein {ECO:0000313|EMBL:EFW89311.1}; TaxID=525379 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus equinus ATCC 9812.;"
71_003_scaffold_137_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25529..26074)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DLQ1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82472.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_003_scaffold_137_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26406..27968)
DNA (1563bp) protein (521aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
guaA; GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRU9_BIFBI
71_003_scaffold_137_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28497..30974
DNA (2478bp) protein (826aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
xylulose-5-phosphate/Fructose-6-phosphate phosphoketolase; K01632 fructose-6-phosphate phosphoketolase [EC:4.1.2.22]
Probable phosphoketolase n=7 Tax=Bifidobacterium bifidum RepID=E3EQW1_BIFBS
71_003_scaffold_137_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31212..32273
DNA (1062bp) protein (354aa)
Low-affinity inorganic phosphate transporter n=3 Tax=Bifidobacterium RepID=E3EQW2_BIFBS
Low-affinity inorganic phosphate transporter; K03306 inorganic phosphate transporter, PiT family
Low-affinity inorganic phosphate transporter {ECO:0000313|EMBL:KFI42834.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_003_scaffold_137_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32324..32947
DNA (624bp) protein (208aa)
Uncharacterized protein n=7 Tax=Bifidobacterium bifidum RepID=E4V972_BIFBI
putative pit accessory protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42835.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Displaying items 1-30 of 38 in total

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