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71_003_scaffold_297

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_297_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..352
DNA (351bp) protein (117aa)
pfl; formate acetyltransferase; K00656 formate C-acetyltransferase [EC:2.3.1.54]
Pfl Formate acetyltransferase {ECO:0000313|EMBL:KFI43256.1}; EC=2.3.1.54 {ECO:0000313|EMBL:KFI43256.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Formate acetyltransferase n=5 Tax=Bifidobacterium bifidum RepID=E3EMF3_BIFBS
71_003_scaffold_297_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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544..1425
DNA (882bp) protein (294aa)
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Pyruvate formate-lyase 1-activating enzyme n=6 Tax=Bifidobacterium RepID=I3WIP9_BIFBI
71_003_scaffold_297_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1561..2151
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WIP8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04761.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_003_scaffold_297_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2141..3427
DNA (1287bp) protein (429aa)
3'-5' exonuclease n=2 Tax=Bifidobacterium bifidum RepID=E4VAG9_BIFBI
Ribonuclease D {ECO:0000313|EMBL:EKF16569.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
3'-5' exonuclease
71_003_scaffold_297_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3480..4865
DNA (1386bp) protein (462aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Trigger factor n=5 Tax=Bifidobacterium RepID=E3EME9_BIFBS
tig; trigger factor Tig; K03545 trigger factor
71_003_scaffold_297_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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5071..6474
DNA (1404bp) protein (468aa)
Chloride channel protein n=1 Tax=Bifidobacterium bifidum LMG 13195 PF0_BIFBI">RepID=K2IPF0_BIFBI
Chloride channel protein {ECO:0000313|EMBL:EKE50610.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
chloride channel protein
71_003_scaffold_297_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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6979..7590
DNA (612bp) protein (204aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ATP-dependent Clp protease proteolytic subunit n=8 Tax=Bifidobacterium RepID=E3EME7_BIFBS
71_003_scaffold_297_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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7596..8315
DNA (720bp) protein (240aa)
clpP2; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
ATP-dependent Clp protease proteolytic subunit n=5 Tax=Bifidobacterium bifidum RepID=E4NXK9_BIFBP
71_003_scaffold_297_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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8416..9729
DNA (1314bp) protein (438aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VAG4_BIFBI
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
clpX; ATP-dependent Clp protease ATP-binding subunit clpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
71_003_scaffold_297_trna_1
unknown

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9831..9904
DNA (74bp)
transferRNA Arg
71_003_scaffold_297_trna_2
unknown

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9954..10027
DNA (74bp)
transferRNA Arg
71_003_scaffold_297_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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10157..11341
DNA (1185bp) protein (395aa)
metC; cystathionine beta-lyase (EC:4.4.1.8); K14155 cystathione beta-lyase [EC:4.4.1.8]
Cystathionine beta-lyase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LCL0_BIFBI
Cystathionine beta-lyase {ECO:0000313|EMBL:EKF15584.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Displaying 12 items

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