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71_003_scaffold_14

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Displaying items 1-30 of 210 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_14_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59..373)
DNA (315bp) protein (105aa)
Primosomal replication protein n n=838 Tax=Enterobacteriaceae RepID=PRIB_ECO24
priB; Primosomal replication protein n
Single-strand binding protein/Primosomal replication protein n {ECO:0000313|EMBL:ACT30820.1}; TaxID=469008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain B / BL21-DE3).;"
71_003_scaffold_14_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(380..775)
DNA (396bp) protein (132aa)
30S ribosomal protein S6 n=1250 Tax=Enterobacteriaceae RepID=RS6_ECOLI
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000256|SAAS:SAAS00020539}; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
71_003_scaffold_14_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1104..1379
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Escherichia coli MS 115-1 RepID=D7Y3I4_ECOLX
yjfY; hypothetical protein
Putative outer membrane protein {ECO:0000313|EMBL:EGI18471.1}; TaxID=656419 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M718.;"
71_003_scaffold_14_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1508..2194)
DNA (687bp) protein (229aa)
sgaE; L-ribulose-5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase UlaF {ECO:0000256|HAMAP-Rule:MF_01952}; EC=5.1.3.4 {ECO:0000256|HAMAP-Rule:MF_01952};; L-ascorbate utilization protein F {ECO:0000256|HAMAP-Rule:MF_01952}; Phosphoribulose isomerase {ECO:0000256|HAMAP-Rule:MF_01952}; TaxID=868181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC10B.;"
L-ribulose-5-phosphate 4-epimerase UlaF n=453 Tax=Escherichia coli RepID=ULAF_ECO55
71_003_scaffold_14_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2194..3048)
DNA (855bp) protein (285aa)
L-ribulose-5-phosphate 3-epimerase UlaE n=145 Tax=Enterobacteriaceae RepID=ULAE_ECO55
L-xylulose 5-phosphate 3-epimerase
Xylulose 5-phosphate 3-epimerase {ECO:0000313|EMBL:AKE86291.1}; TaxID=1048254 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O104:H4 str. C227-11.;"
71_003_scaffold_14_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3058..3708)
DNA (651bp) protein (217aa)
ulaD; 3-keto-L-gulonate-6-phosphate decarboxylase; K03078 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
3-keto-L-gulonate-6-phosphate decarboxylase UlaD {ECO:0000256|HAMAP-Rule:MF_01267}; EC=4.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01267};; 3-dehydro-L-gulonate-6-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01267}; KGPDC {ECO:0000256|HAMAP-Rule:MF_01267}; L-ascorbate utilization protein D {ECO:0000256|HAMAP-Rule:MF_01267}; TaxID=244319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O26:H11.;"
3-keto-L-gulonate-6-phosphate decarboxylase UlaD n=997 Tax=Enterobacteriaceae RepID=ULAD_ECO24
71_003_scaffold_14_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3722..4186)
DNA (465bp) protein (155aa)
ulaC; PTS system L-ascorbate-specific transporter subunit IIA (EC:2.7.1.69); K02821 PTS system, ascorbate-specific IIA component [EC:2.7.1.69]
Ascorbate-specific phosphotransferase enzyme IIA component n=742 Tax=Enterobacteriaceae RepID=ULAC_SHIBS
L-ascorbate-specific enzyme IIA component of PTS {ECO:0000313|EMBL:EID69123.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
71_003_scaffold_14_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4196..4501)
DNA (306bp) protein (102aa)
ulaB; PTS system L-ascorbate-specific transporter subunit IIB (EC:2.7.1.69); K02822 PTS system, ascorbate-specific IIB component [EC:2.7.1.69]
Ascorbate-specific phosphotransferase enzyme IIB component n=495 Tax=Enterobacteriaceae RepID=ULAB_ECOL6
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EFK51797.1}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
71_003_scaffold_14_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4517..5914)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=366 Tax=Escherichia RepID=B6I298_ECOSE
ulaA; PTS system ascorbate-specific transporter subunit IIC
PTS ascorbate transporter subunit IIC {ECO:0000313|EMBL:ETE24046.1}; TaxID=1417796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli LAU-EC10.;"
71_003_scaffold_14_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6269..7333
DNA (1065bp) protein (355aa)
ulaG; Zn-dependent hydrolases of the beta-lactamase fold; K03476 L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
Probable L-ascorbate-6-phosphate lactonase UlaG {ECO:0000256|HAMAP-Rule:MF_01266}; EC=3.1.1.- {ECO:0000256|HAMAP-Rule:MF_01266};; L-ascorbate utilization protein G {ECO:0000256|HAMAP-Rule:MF_01266}; TaxID=868142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2E.;"
Probable L-ascorbate-6-phosphate lactonase UlaG n=783 Tax=Enterobacteriaceae RepID=ULAG_ECO24
71_003_scaffold_14_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7441..8196
DNA (756bp) protein (252aa)
HTH-type transcriptional regulator UlaR n=1288 Tax=Enterobacteriaceae RepID=ULAR_ECO24
yjfQ; DNA-binding transcriptional dual regulator
HTH-type transcriptional regulator UlaR {ECO:0000256|HAMAP-Rule:MF_01563}; TaxID=1268998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908573.;"
71_003_scaffold_14_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8193..8942)
DNA (750bp) protein (250aa)
Esterase yjfP {ECO:0000313|EMBL:KDU23236.1}; EC=3.1.-.- {ECO:0000313|EMBL:KDU23236.1};; TaxID=1444251 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-267-03_S4_C2.;"
Esterase n=90 Tax=Escherichia coli RepID=J9ZSG1_ECO14
esterase
71_003_scaffold_14_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9124..9453
DNA (330bp) protein (110aa)
UPF0379 lipoprotein yjfO n=809 Tax=Enterobacteriaceae RepID=E2QKC3_ECOLX
yjfO; putative biofilm stress and motility protein A
Lipoprotein BsmA {ECO:0000313|EMBL:EHP67025.1}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4_1_47FAA.;"
71_003_scaffold_14_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9602..9877
DNA (276bp) protein (92aa)
Uncharacterized protein YjfN n=1370 Tax=Enterobacteriaceae RepID=YJFN_ECO57
yjfN; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEJ43071.1}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
71_003_scaffold_14_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9994..11619)
DNA (1626bp) protein (542aa)
Isovaleryl CoA dehydrogenase n=109 Tax=Escherichia coli RepID=B7LC47_ECO55
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:KDV40003.1}; TaxID=1446599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O146:H21 str. 2010C-3325.;"
isovaleryl CoA dehydrogenase
71_003_scaffold_14_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11703..12866)
DNA (1164bp) protein (388aa)
Glutathionylspermidine synthase domain protein n=110 Tax=Escherichia coli RepID=A7ZV57_ECO24
glutathionylspermidine synthase
Glutathionylspermidine synthase family protein {ECO:0000313|EMBL:EGW98631.1}; TaxID=754086 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli STEC_DG131-3.;"
71_003_scaffold_14_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12869..13507)
DNA (639bp) protein (213aa)
Uncharacterized protein n=123 Tax=Escherichia coli RepID=A7ZV56_ECO24
hypothetical protein
YjfM protein {ECO:0000313|EMBL:EFE60391.2}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
71_003_scaffold_14_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13517..13915)
DNA (399bp) protein (133aa)
UPF0719 inner membrane protein YjfL n=926 Tax=Enterobacteriaceae RepID=YJFL_ECO57
yjfL; hypothetical protein; K08989 putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EHU34180.1}; TaxID=868139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2B.;"
71_003_scaffold_14_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13933..14592)
DNA (660bp) protein (220aa)
Uncharacterized protein n=315 Tax=Enterobacteriaceae RepID=J7RC86_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESA68843.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
71_003_scaffold_14_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14643..15341)
DNA (699bp) protein (233aa)
Uncharacterized protein YjfJ n=895 Tax=Enterobacteriaceae RepID=YJFJ_ECOL6
yjfJ; predicted transcriptional regulator effector protein
Putative alpha helical protein {ECO:0000313|EMBL:EGI52583.1}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H299.;"
71_003_scaffold_14_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15360..15761)
DNA (402bp) protein (134aa)
Uncharacterized protein n=429 Tax=Enterobacteriaceae RepID=J7R996_ECOLX
putative cytoplasmic protein
Uncharacterized protein {ECO:0000313|EMBL:EFU35494.1}; TaxID=679202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 85-1.;"
71_003_scaffold_14_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15888..16619)
DNA (732bp) protein (244aa)
rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1351 Tax=Enterobacteriaceae RepID=RLMB_ECO57
71_003_scaffold_14_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16799..19240)
DNA (2442bp) protein (814aa)
exoribonuclease R; K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1446583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O145:H25 str. 07-3858.;"
Ribonuclease R n=333 Tax=Enterobacteriaceae RepID=J7QZ23_ECOLX
71_003_scaffold_14_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19279..19704)
DNA (426bp) protein (142aa)
HTH-type transcriptional repressor NsrR n=197 Tax=Escherichia RepID=NSRR_ECO24
transcriptional repressor NsrR; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
HTH-type transcriptional repressor NsrR {ECO:0000256|HAMAP-Rule:MF_01177, ECO:0000256|SAAS:SAAS00010440}; TaxID=868141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2D.;"
71_003_scaffold_14_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19909..21207)
DNA (1299bp) protein (433aa)
purA; adenylosuccinate synthetase; K01939 adenylosuccinate synthase [EC:6.3.4.4]
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=244319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O26:H11.;"
Adenylosuccinate synthetase n=1229 Tax=Bacteria RepID=PURA_ECO24
71_003_scaffold_14_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21269..21466)
DNA (198bp) protein (66aa)
Uncharacterized protein YjeT n=1249 Tax=Enterobacteriaceae RepID=YJET_ECO57
yjeT; hypothetical protein; K09937 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDZ16526.1}; TaxID=1444185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-474-04_S3_C3.;"
71_003_scaffold_14_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21548..22552)
DNA (1005bp) protein (335aa)
Modulator of FtsH protease HflC n=1420 Tax=Bacteria RepID=HFLC_ECO57
hflC; Protein hflC
Modulator of FtsH protease HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=868142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2E.;"
71_003_scaffold_14_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22555..23814)
DNA (1260bp) protein (420aa)
Modulator for HflB protease specific for phage lambda cII repressor n=84 Tax=Enterobacteriaceae RepID=B7LC29_ECO55
FtsH protease regulator HflK
Cell division protein FtsH {ECO:0000313|EMBL:KDV62269.1}; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O128:H2 str. 2011C-3317.;"
71_003_scaffold_14_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23900..25180)
DNA (1281bp) protein (427aa)
GTPase HflX n=962 Tax=Enterobacteriaceae RepID=C3SG37_ECOLX
hflX; GTPase HflX; K03665 GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1444081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S1_C2.;"
71_003_scaffold_14_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25257..25565)
DNA (309bp) protein (103aa)
RNA-binding protein Hfq n=1365 Tax=Enterobacteriaceae RepID=HFQ_ECO24
hfq; RNA-binding protein Hfq; K03666 host factor-I protein
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
Displaying items 1-30 of 210 in total

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