ggKbase home page

71_003_scaffold_27

Search features with annotation key words

Displaying items 1-30 of 163 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_27_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


50..2677
DNA (2628bp) protein (876aa)
gyrA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1444126 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-460-02_S3_C1.;"
DNA gyrase subunit A n=348 Tax=Enterobacteriaceae RepID=GYRA_ECOLI
71_003_scaffold_27_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2826..4514
DNA (1689bp) protein (563aa)
Uncharacterized protein n=17 Tax=Escherichia coli RepID=A7ZP48_ECO24
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEJ46415.1}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
71_003_scaffold_27_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4511..5134
DNA (624bp) protein (208aa)
Uncharacterized protein n=200 Tax=Enterobacteriaceae RepID=A7ZP47_ECO24
hypothetical protein; K09934 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESD04124.1}; TaxID=1268977 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113302.;"
71_003_scaffold_27_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5278..9672
DNA (4395bp) protein (1465aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE135 RepID=L4H1M7_ECOLX
Alpha-2-macroglobulin family protein {ECO:0000313|EMBL:EII23932.1}; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
yfaS; alpha-2-macroglobulin; K06894
71_003_scaffold_27_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9673..11322
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE210 RepID=L3E8V9_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EID67232.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
71_003_scaffold_27_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11327..12103
DNA (777bp) protein (259aa)
Uncharacterized protein n=299 Tax=Enterobacteriaceae RepID=C3T332_ECOLX
yfaP; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ29931.1}; TaxID=741093 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli Xuzhou21.;"
71_003_scaffold_27_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12177..13361)
DNA (1185bp) protein (395aa)
atoB; acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase n=8 Tax=Escherichia coli RepID=I0VSW8_ECOLX
Acetyl-CoA C-acetyltransferase family protein {ECO:0000313|EMBL:EMX48067.1}; TaxID=1116139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.2.;"
71_003_scaffold_27_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13392..14714)
DNA (1323bp) protein (441aa)
Short-chain fatty acids transporter n=314 Tax=Escherichia RepID=ATOE_ECOLI
atoE; Short-chain fatty acids transporter
Short-chain fatty acids transporter {ECO:0000313|EMBL:KDU53653.1}; TaxID=1444224 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-373-03_S4_C1.;"
71_003_scaffold_27_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14711..15361)
DNA (651bp) protein (217aa)
atoA; acetyl-CoA:acetoacetyl-CoA transferase, subunit beta; K01035 acetate CoA-transferase beta subunit [EC:2.8.3.8]
Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit {ECO:0000313|EMBL:CDK49114.1}; EC=2.8.3.8 {ECO:0000313|EMBL:CDK49114.1};; TaxID=1433131 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS1.;"
Acetate CoA-transferase subunit beta n=284 Tax=Enterobacteriaceae RepID=ATOA_ECOLI
71_003_scaffold_27_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15361..16023)
DNA (663bp) protein (221aa)
atoD; acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit, subunit of alpha complex and acetoacetyl-CoA transferase (EC:2.8.3.-)
Acetate CoA-transferase subunit alpha n=7 Tax=Escherichia coli RepID=L3E8V5_ECOLX
Acetyl-CoA:acetoacetyl-CoA transferase subunit alpha {ECO:0000313|EMBL:KIH05586.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
71_003_scaffold_27_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16219..17604)
DNA (1386bp) protein (462aa)
Fused response regulator of ato opeon, in two-component system with AtoS: response regulator sigma54 interaction protein n=18 Tax=Escherichia coli RepID=B7NN32_ECO7I
atoC; acetoacetate metabolism regulatory protein AtoC
Transcriptional regulator {ECO:0000313|EMBL:EYZ91718.1}; TaxID=1446551 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O119:H4 str. 03-3458.;"
71_003_scaffold_27_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17601..19427)
DNA (1827bp) protein (609aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
atoS; sensory histidine kinase AtoS; K07710 two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3]
Signal transduction histidine-protein kinase AtoS n=7 Tax=Escherichia coli RepID=L3E8X5_ECOLX
71_003_scaffold_27_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19594..22443
DNA (2850bp) protein (950aa)
Sensor histidine kinase RcsC {ECO:0000256|HAMAP-Rule:MF_00979}; EC=2.7.13.3 {ECO:0000256|HAMAP-Rule:MF_00979};; TaxID=344610 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 53638.;"
sensor kinase RcsC; K07677 two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
Sensor histidine kinase/response regulator RcsC n=5 Tax=Enterobacteriaceae RepID=B2N6I0_ECOLX
71_003_scaffold_27_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22757..23407)
DNA (651bp) protein (217aa)
Transcriptional regulatory protein RcsB n=1388 Tax=Enterobacteriaceae RepID=RCSB_ECOLX
rcsB; Capsular synthesis regulator component B; K07687 two-component system, NarL family, captular synthesis response regulator RcsB
Transcriptional regulatory protein RcsB {ECO:0000256|HAMAP-Rule:MF_00981}; TaxID=1446698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:NM str. 08-4540.;"
71_003_scaffold_27_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23424..26096)
DNA (2673bp) protein (891aa)
two-component system sensor kinase; K07676 two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
Phosphotransferase RcsD {ECO:0000256|HAMAP-Rule:MF_00980}; EC=2.7.2.- {ECO:0000256|HAMAP-Rule:MF_00980};; Phosphotransfer intermediate RcsD {ECO:0000256|HAMAP-Rule:MF_00980}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
Sensor histidine kinase YojN n=16 Tax=Escherichia coli RepID=A8A280_ECOHS
71_003_scaffold_27_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26834..27958
DNA (1125bp) protein (375aa)
Outer membrane protein C n=11 Tax=Escherichia coli RepID=C6K7M8_ECOLX
Outer membrane protein {ECO:0000313|EMBL:EID67244.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
ompC; Outer membrane C precursor protein; K09475 outer membrane pore protein C
71_003_scaffold_27_17
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28070..29125
DNA (1056bp) protein (352aa)
Thiamine biosynthesis lipoprotein ApbE n=12 Tax=Enterobacteriaceae RepID=B2TV20_SHIB3
apbE; thiamine biosynthesis lipoprotein ApbE; K03734 thiamine biosynthesis lipoprotein
ApbE family protein {ECO:0000313|EMBL:EJZ65572.1}; TaxID=766155 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1485-80.;"
71_003_scaffold_27_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29199..30263
DNA (1065bp) protein (355aa)
Fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase n=7 Tax=Escherichia coli RepID=I4T577_ECOLX
Regulatory protein ada {ECO:0000313|EMBL:EOV61181.1}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
ada; fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase
71_003_scaffold_27_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30263..30913
DNA (651bp) protein (217aa)
alkylated DNA repair protein AlkB; K03919 alkylated DNA repair protein [EC:1.14.11.-]
Alkylated DNA repair protein AlkB n=7 Tax=Escherichia coli RepID=M9B5D9_ECOLX
Alkylated DNA repair protein AlkB {ECO:0000313|EMBL:EMX48055.1}; TaxID=1116139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.2.;"
71_003_scaffold_27_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30989..32632
DNA (1644bp) protein (548aa)
ABC transporter ATP-binding protein YojI n=9 Tax=Escherichia coli RepID=L3E8U7_ECOLX
ABC transporter ATP-binding protein YojI {ECO:0000313|EMBL:ENA07320.1}; TaxID=1116047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0299917.1.;"
multidrug transporter membrane component/ATP-binding protein; K06159 putative ATP-binding cassette transporter
71_003_scaffold_27_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32850..34496
DNA (1647bp) protein (549aa)
malate:quinone oxidoreductase; K00116 malate dehydrogenase (quinone) [EC:1.1.5.4]
Probable malate:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00212}; EC=1.1.5.4 {ECO:0000256|HAMAP-Rule:MF_00212};; MQO {ECO:0000256|HAMAP-Rule:MF_00212}; Malate dehydrogenase [quinone] {ECO:0000256|HAMAP-Rule:MF_00212}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
Probable malate:quinone oxidoreductase n=39 Tax=Escherichia coli RepID=MQO_ECOSE
71_003_scaffold_27_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34645..35133)
DNA (489bp) protein (163aa)
Ecotin n=695 Tax=Enterobacteriaceae RepID=ECOT_ECO24
eco; ecotin a serine protease inhibitor; K08276 ecotin
Ecotin {ECO:0000256|HAMAP-Rule:MF_00706, ECO:0000256|SAAS:SAAS00013245}; Flags: Precursor;; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
71_003_scaffold_27_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35268..35432)
DNA (165bp) protein (55aa)
Uncharacterized protein n=30 Tax=Enterobacteriaceae RepID=F4NDU2_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:EGU97722.1}; TaxID=796392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 79-10.;"
hypothetical protein
71_003_scaffold_27_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35541..36035
DNA (495bp) protein (165aa)
Ferredoxin-type protein n=52 Tax=Escherichia coli RepID=B6I1A6_ECOSE
ferredoxin-type protein; K02572 ferredoxin-type protein NapF
Ferredoxin-type protein NapF {ECO:0000313|EMBL:ESD04109.1}; TaxID=1268977 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113302.;"
71_003_scaffold_27_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36025..36288
DNA (264bp) protein (88aa)
Protein NapD n=1009 Tax=Enterobacteriaceae RepID=NAPD_ECO57
NapD family protein; K02570 periplasmic nitrate reductase NapD
NapD family protein {ECO:0000313|EMBL:EMX86614.1}; TaxID=1116119 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2719100.;"
71_003_scaffold_27_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36285..38771
DNA (2487bp) protein (829aa)
Nitrate reductase {ECO:0000256|HAMAP-Rule:MF_01630, ECO:0000256|SAAS:SAAS00064461}; EC=1.7.99.4 {ECO:0000256|HAMAP-Rule:MF_01630, ECO:0000256|SAAS:SAAS00064461};; Flags: Precursor;; TaxID=1125638 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.1.;"
Periplasmic nitrate reductase n=102 Tax=Escherichia coli RepID=NAPA_ECO55
nitrate reductase catalytic subunit
71_003_scaffold_27_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38778..39473
DNA (696bp) protein (232aa)
Ferredoxin-type protein NapG n=1096 Tax=Enterobacteriaceae RepID=NAPG_ECOL6
napG; quinol dehydrogenase periplasmic component; K02573 ferredoxin-type protein NapG
Ferredoxin {ECO:0000313|EMBL:EQQ07859.1}; TaxID=1281024 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 87 (4-5977630).;"
71_003_scaffold_27_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39460..40323
DNA (864bp) protein (288aa)
Ferredoxin-type protein {ECO:0000313|EMBL:EHX25677.1}; EC=1.7.99.4 {ECO:0000313|EMBL:EHX25677.1};; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
Ferredoxin-type protein NapH n=280 Tax=Enterobacteriaceae RepID=A7ZP26_ECO24
napH; quinol dehydrogenase membrane component; K02574 ferredoxin-type protein NapH
71_003_scaffold_27_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40320..40769
DNA (450bp) protein (150aa)
Periplasmic nitrate reductase, electron transfer subunit n=585 Tax=Enterobacteriaceae RepID=J7QTB6_ECOLX
nitrate reductase cytochrome c-type subunit (NapB); K02568 cytochrome c-type protein NapB
Periplasmic nitrate reductase, electron transfer subunit {ECO:0000256|PIRNR:PIRNR006105}; Diheme cytochrome c NapB {ECO:0000256|PIRNR:PIRNR006105}; TaxID=1116133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.8.;"
71_003_scaffold_27_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40779..41381
DNA (603bp) protein (201aa)
Cytochrome c-type protein NapC n=2 Tax=Escherichia coli RepID=I0VSM5_ECOLX
Cytochrome c-type protein {ECO:0000256|PIRNR:PIRNR000013}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
periplasmic nitrate (or nitrite) reductase c-type cytochrome; K02569 cytochrome c-type protein NapC
Displaying items 1-30 of 163 in total

View Taxonomy