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71_003_scaffold_105

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Displaying items 1-30 of 86 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_105_trna_1
unknown

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22..101
DNA (80bp)
transferRNA Asp
71_003_scaffold_105_trna_2
unknown

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107..179
DNA (73bp)
transferRNA Trp
71_003_scaffold_105_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(278..1117)
DNA (840bp) protein (280aa)
HTH-type transcriptional regulator HdfR n=523 Tax=Enterobacteriaceae RepID=HDFR_ECO24
hdfR; transcriptional regulator HdfR
HTH-type transcriptional regulator HdfR {ECO:0000256|HAMAP-Rule:MF_01233}; H-NS-dependent flhDC regulator {ECO:0000256|HAMAP-Rule:MF_01233}; TaxID=868181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC10B.;"
71_003_scaffold_105_2
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1236..1574
DNA (339bp) protein (113aa)
UPF0438 protein YifE n=1447 Tax=Bacteria RepID=YIFE_ECO57
yifE; hypothetical protein; K09897 hypothetical protein
Protein yifE {ECO:0000313|EMBL:EFW51078.1}; TaxID=941429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae CDC 74-1112.;"
71_003_scaffold_105_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1599..3119)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=266 Tax=Escherichia coli RepID=B6I4A2_ECOSE
ATP-dependent protease
Mg chelatase-like protein {ECO:0000313|EMBL:ESA67815.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
71_003_scaffold_105_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3700..5346
DNA (1647bp) protein (549aa)
acetolactate synthase 2 catalytic subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1444157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S3_C2.;"
Acetolactate synthase n=97 Tax=Escherichia coli RepID=B6I4A5_ECOSE
71_003_scaffold_105_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5343..5606
DNA (264bp) protein (88aa)
ilvM; Acetolactate synthase isozyme 2 small subunit; K11258 acetolactate synthase II small subunit [EC:2.2.1.6]
Acetolactate synthase isozyme 2 small subunit {ECO:0000313|EMBL:EMX82252.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EMX82252.1};; TaxID=1116119 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2719100.;"
Acetolactate synthase isozyme 2 small subunit n=1421 Tax=Enterobacteriaceae RepID=ILVM_ECOL6
71_003_scaffold_105_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5626..6555
DNA (930bp) protein (310aa)
ilvE; branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EHU34862.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EHU34862.1};; TaxID=868139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2B.;"
Branched-chain-amino-acid aminotransferase n=1184 Tax=Enterobacteriaceae RepID=ILVE_ECO57
71_003_scaffold_105_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6620..8470
DNA (1851bp) protein (617aa)
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1444223 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-267-03_S4_C1.;"
Dihydroxy-acid dehydratase n=242 Tax=Enterobacteriaceae RepID=ILVD_ECO24
71_003_scaffold_105_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8473..10017
DNA (1545bp) protein (515aa)
ilvA; threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19]
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=679202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 85-1.;"
Threonine deaminase (Dehydratase) n=723 Tax=Enterobacteriaceae RepID=J7QIT5_ECOLX
71_003_scaffold_105_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10069..11046)
DNA (978bp) protein (326aa)
HTH-type transcriptional regulator IlvY n=1 Tax=Escherichia coli H591 RepID=F4VL98_ECOLX
Transcriptional activator protein IlvY {ECO:0000313|EMBL:AJE58339.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
ilvY; DNA-binding transcriptional regulator IlvY; K02521 LysR family transcriptional regulator, positive regulator for ilvC
71_003_scaffold_105_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11112..12587
DNA (1476bp) protein (492aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00185580}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=679204 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 145-7.;"
ilvC; ketol-acid reductoisomerase; K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
Ketol-acid reductoisomerase n=1 Tax=Escherichia coli 113303 RepID=U9Y598_ECOLX
71_003_scaffold_105_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12674..12955)
DNA (282bp) protein (94aa)
ppiC; peptidyl-prolyl cis-trans isomerase C; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
Peptidyl-prolyl cis-trans isomerase C n=1296 Tax=Enterobacteriaceae RepID=PPIC_ECO57
71_003_scaffold_105_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13154..13603)
DNA (450bp) protein (150aa)
Uncharacterized protein n=96 Tax=Escherichia coli RepID=B6I4B3_ECOSE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAG79583.1}; TaxID=409438 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain SE11).;"
71_003_scaffold_105_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13820..15841
DNA (2022bp) protein (674aa)
ATP-dependent DNA helicase Rep {ECO:0000256|HAMAP-Rule:MF_01920}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01920, ECO:0000256|SAAS:SAAS00145970};; TaxID=754086 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli STEC_DG131-3.;"
ATP-dependent DNA helicase rep n=405 Tax=Escherichia coli RepID=C3SKS7_ECOLX
ATP-dependent DNA helicase Rep
71_003_scaffold_105_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15888..17372)
DNA (1485bp) protein (495aa)
gpp; guanosine pentaphosphatase/exopolyphosphatase Gpp; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01550, ECO:0000256|SAAS:SAAS00181013}; EC=3.6.1.40 {ECO:0000256|HAMAP-Rule:MF_01550, ECO:0000256|SAAS:SAAS00181014};; Guanosine pentaphosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_01550}; pppGpp-5'-phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_01550}; TaxID=869675 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1.2264.;"
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase n=279 Tax=Enterobacteriaceae RepID=GPPA_ECO24
71_003_scaffold_105_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17506..18771)
DNA (1266bp) protein (422aa)
ATP-dependent RNA helicase RhlB {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011806}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011808};; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
ATP-dependent RNA helicase RhlB n=946 Tax=Enterobacteriaceae RepID=RHLB_ECO24
rhlB; ATP-dependent RNA helicase
71_003_scaffold_105_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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18902..19231
DNA (330bp) protein (110aa)
Thioredoxin n=9 Tax=Enterobacteriaceae RepID=E0J411_ECOLW
trxA; thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1432555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC7.;"
71_003_scaffold_105_17
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19558..20817
DNA (1260bp) protein (420aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=344609 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii serotype 18 (strain CDC 3083-94 / BS512).;"
Transcription termination factor Rho n=1427 Tax=Enterobacteriaceae RepID=RHO_ECO57
rho; Transcription termination factor rho
71_003_scaffold_105_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21057..22160
DNA (1104bp) protein (368aa)
rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; K02851 UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33]
Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase n=802 Tax=Enterobacteriaceae RepID=WECA_ECOL6
Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase {ECO:0000313|EMBL:EOU86297.1}; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
71_003_scaffold_105_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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22172..23218
DNA (1047bp) protein (349aa)
Lipopolysaccharide biosynthesis protein WzzE n=658 Tax=Enterobacteriaceae RepID=WZZE_ECO57
wzzE; Lipopolysaccharide biosynthesis protein wzzE; K05790 lipopolysaccharide biosynthesis protein WzzE
Lipopolysaccharide biosynthesis protein WzzE {ECO:0000313|EMBL:EZD88942.1}; TaxID=1446698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:NM str. 08-4540.;"
71_003_scaffold_105_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23274..24404
DNA (1131bp) protein (377aa)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Escherichia coli 113303 RepID=U9Y0B0_ECOLX
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:ESA67794.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
UDP-N-acetylglucosamine 2-epimerase
71_003_scaffold_105_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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24401..25663
DNA (1263bp) protein (421aa)
Nucleotide sugar dehydrogenase n=1 Tax=Escherichia coli 113303 RepID=U9Y089_ECOLX
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:ESA67793.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
rffD; UDP-N-acetyl-D-mannosamine dehydrogenase
71_003_scaffold_105_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25663..26730
DNA (1068bp) protein (356aa)
rfbB1; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O128:H2 str. 2011C-3317.;"
dTDP-glucose 4,6-dehydratase n=93 Tax=Enterobacteriaceae RepID=A7ZTZ0_ECO24
71_003_scaffold_105_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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26749..27630
DNA (882bp) protein (294aa)
rffH; glucose-1-phosphate thymidylyltransferase; K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
Glucose-1-phosphate thymidylyltransferase 2 n=816 Tax=Enterobacteriaceae RepID=RMLA2_ECOLI
71_003_scaffold_105_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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27608..28282
DNA (675bp) protein (225aa)
TDP-fucosamine acetyltransferase n=267 Tax=Enterobacteriaceae RepID=B7L8C9_ECO55
rffC; TDP-fucosamine acetyltransferase
TDP-D-fucosamine acetyltransferase {ECO:0000313|EMBL:EMU66371.1}; TaxID=1116135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.12.;"
71_003_scaffold_105_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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28287..29417
DNA (1131bp) protein (377aa)
TDP-4-keto-6-deoxy-D-glucose transaminase n=7 Tax=Escherichia coli RepID=B1LLW4_ECOSM
wecE; TDP-4-oxo-6-deoxy-D-glucose transaminase; K02805 lipopolysaccharide biosynthesis protein
dTDP-4-amino-4,6-dideoxy-D-glucose transaminase {ECO:0000313|EMBL:ESD71986.1}; TaxID=1268995 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908525.;"
71_003_scaffold_105_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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29419..30669
DNA (1251bp) protein (417aa)
Polysaccharide biosynthesis protein n=197 Tax=Enterobacteriaceae RepID=A7ZTZ4_ECO24
translocase
O-antigen translocase WzxE {ECO:0000313|EMBL:BAI33075.1}; TaxID=585395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O103:H2 (strain 12009 / EHEC).;"
71_003_scaffold_105_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30666..31745
DNA (1080bp) protein (360aa)
rffT; TDP-Fuc4NAc:lipidIIFuc4NAc transferase; K12582 TDP-Fuc4NAc transferase [EC:2.4.1.-]
TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase {ECO:0000256|HAMAP-Rule:MF_01002, ECO:0000256|SAAS:SAAS00151893}; EC=2.4.1.325 {ECO:0000256|HAMAP-Rule:MF_01002, ECO:0000256|SAAS:SAAS00151892};; 4-alpha-L-fucosyltransferase {ECO:0000256|HAMAP-Rule:MF_01002}; TDP-Fuc4NAc:lipid II Fuc4NAc transferase {ECO:0000256|HAMAP-Rule:MF_01002}; TaxID=1116135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.12.;"
4-alpha-L-fucosyltransferase n=164 Tax=Enterobacteriaceae RepID=WECF_ECO24
71_003_scaffold_105_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31742..33094
DNA (1353bp) protein (451aa)
common antigen polymerase; K02853 4-alpha-L-fucosyltransferase [EC:2.4.1.-]
Putative ECA polymerase n=576 Tax=Enterobacteriaceae RepID=WZYE_ECO24
Probable ECA polymerase {ECO:0000256|HAMAP-Rule:MF_01003, ECO:0000256|SAAS:SAAS00275810}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
Displaying items 1-30 of 86 in total

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