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71_003_scaffold_375

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_375_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(104..652)
DNA (549bp) protein (183aa)
Ribosome maturation factor RimM n=1393 Tax=Enterobacteriaceae RepID=RIMM_SHIBS
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=868139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2B.;"
71_003_scaffold_375_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(671..919)
DNA (249bp) protein (83aa)
30S ribosomal protein S16 n=1441 Tax=Enterobacteriaceae RepID=RS16_ECO24
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=869678 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 99.0741.;"
71_003_scaffold_375_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1168..2529)
DNA (1362bp) protein (454aa)
Signal recognition particle protein n=1280 Tax=Enterobacteriaceae RepID=SRP54_ECO57
ffh; signal recognition particle protein; K03106 signal recognition particle subunit SRP54
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
71_003_scaffold_375_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2621..3487
DNA (867bp) protein (289aa)
Inner membrane protein ypjD n=1 Tax=Escherichia coli KTE101 RepID=L4FV51_ECOLX
putative cytochrome C assembly protein
Inner membrane protein ypjD {ECO:0000313|EMBL:EIF84117.1}; TaxID=656421 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M919.;"
71_003_scaffold_375_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3553..4794
DNA (1242bp) protein (414aa)
Membrane protein n=55 Tax=Escherichia coli RepID=T2G1M9_ECOLX
yfjD; inner membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ESD23656.1}; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
71_003_scaffold_375_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4849..5442)
DNA (594bp) protein (198aa)
heat shock protein GrpE n=1 Tax=Escherichia coli RepID=UPI00036F30D9
grpE; heat shock protein GrpE; K03687 molecular chaperone GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1444185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-474-04_S3_C3.;"
71_003_scaffold_375_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5519..6397
DNA (879bp) protein (293aa)
ppnK; inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23]
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1446580 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O123:H11 str. 2009C-3307.;"
inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Escherichia coli RepID=UPI0002BAA0D2
71_003_scaffold_375_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6483..8144
DNA (1662bp) protein (554aa)
DNA repair protein RecN n=511 Tax=cellular organisms RepID=RECN_ECOLI
recN; recombination and repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N)
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1116135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.12.;"
71_003_scaffold_375_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8293..8634
DNA (342bp) protein (114aa)
Outer membrane protein assembly factor BamE n=1339 Tax=Enterobacteriaceae RepID=BAME_ECOL6
hypothetical protein; K06186 small protein A
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1116119 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2719100.;"
71_003_scaffold_375_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8696..8986)
DNA (291bp) protein (97aa)
UPF0125 protein RatB n=642 Tax=Enterobacteriaceae RepID=RATB_ECOLI
yfjF; hypothetical protein; K09801 hypothetical protein
UPF0125 protein HMPREF1616_02177 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=1269003 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908658.;"
71_003_scaffold_375_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8976..9452)
DNA (477bp) protein (159aa)
Polyketide cyclase/dehydrase family protein n=634 Tax=Enterobacteriaceae RepID=B5Z236_ECO5E
ratA; 50S ribosomal subunit-binding toxin of a predicted toxin-antitoxin pair
Polyketide cyclase/dehydrase {ECO:0000313|EMBL:EFK74360.1}; TaxID=749532 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 78-1.;"
71_003_scaffold_375_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9584..10066
DNA (483bp) protein (161aa)
SsrA-binding protein n=1351 Tax=Enterobacteriaceae RepID=SSRP_ECO24
SsrA-binding protein; K03664 SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; Small protein B {ECO:0000256|HAMAP-Rule:MF_00023}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
71_003_scaffold_375_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10242..10367
DNA (126bp) protein (42aa)
Uncharacterized protein n=6 Tax=Escherichia coli RepID=I4J4E9_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EIF84108.1}; TaxID=656421 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M919.;"
hypothetical protein
71_003_scaffold_375_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10815..11846
DNA (1032bp) protein (344aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T6XIE6_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ESD64840.1}; TaxID=1268996 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908541.;"
hypothetical protein
71_003_scaffold_375_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11898..12242
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=T6XAK1_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ESD64841.1}; TaxID=1268996 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908541.;"
71_003_scaffold_375_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12327..12539)
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=L4J276_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ELG87082.1}; TaxID=1182725 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE146.;"
71_003_scaffold_375_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12738..13292)
DNA (555bp) protein (185aa)
DNA-invertase lambdoid prophage e14 n=2 Tax=Escherichia coli RepID=L4J3L3_ECOLX
DNA-invertase lambdoid prophage e14 {ECO:0000313|EMBL:ELG87083.1}; TaxID=1182725 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE146.;"
pin; site-specific DNA recombinase
Displaying 17 items

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