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71_005_scaffold_103

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_005_scaffold_103_1
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(3..764)
-----------------
DNA (762bp)
protein (254aa)
speF; ornithine decarboxylase (EC:4.1.1.17); K01581 ornithine decarboxylase [EC:4.1.1.17]
UPI0003D6547F related cluster n=1 Tax=unknown RepID=UPI0003D6547F
Ornithine decarboxylase {ECO:0000313|EMBL:ETI88911.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
71_005_scaffold_103_2
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(1079..1564)
-----------------
DNA (486bp)
protein (162aa)
UPI0003D689BC related cluster n=1 Tax=unknown RepID=UPI0003D689BC
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
GreA/GreB family elongation factor; K03624 transcription elongation factor GreA
71_005_scaffold_103_3
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1669..2658)
-----------------
DNA (990bp)
protein (330aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
UPI0003D5FEC0 related cluster n=1 Tax=unknown RepID=UPI0003D5FEC0
tRNA-dihydrouridine synthase
71_005_scaffold_103_4
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2642..3406)
-----------------
DNA (765bp)
protein (255aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
type III pantothenate kinase; K03525 type III pantothenate kinase [EC:2.7.1.33]
UPI0003D68711 related cluster n=1 Tax=unknown RepID=UPI0003D68711
71_005_scaffold_103_5
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3418..4401)
-----------------
DNA (984bp)
protein (328aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin--[acetyl-CoA-carboxylase] ligase n=2 Tax=Dialister micraerophilus RepID=F2BVU0_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
71_005_scaffold_103_6
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4537..6531)
-----------------
DNA (1995bp)
protein (665aa)
ATP-dependent zinc metalloprotease FtsH; K03798 cell division protease FtsH [EC:3.4.24.-]
UPI0003D5F083 related cluster n=1 Tax=unknown RepID=UPI0003D5F083
ATP-dependent zinc metalloprotease FtsH {ECO:0000313|EMBL:ETI86205.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
71_005_scaffold_103_7
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6608..7147)
-----------------
DNA (540bp)
protein (180aa)
UPI0003D59B8A related cluster n=1 Tax=unknown RepID=UPI0003D59B8A
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:KGF11767.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
hypoxanthine phosphoribosyltransferase
71_005_scaffold_103_8
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(7113..8504)
-----------------
DNA (1392bp)
protein (464aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
UPI0003D682B8 related cluster n=1 Tax=unknown RepID=UPI0003D682B8
71_005_scaffold_103_9
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8501..9394)
-----------------
DNA (894bp)
protein (298aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1CZV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF11769.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
71_005_scaffold_103_10
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9447..9914)
-----------------
DNA (468bp)
protein (156aa)
UPI0003D64DBB related cluster n=1 Tax=unknown RepID=UPI0003D64DBB
Uncharacterized protein {ECO:0000313|EMBL:KGF11770.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
general stress protein 13; K07571 S1 RNA binding domain protein
71_005_scaffold_103_11
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9991..10344)
-----------------
DNA (354bp)
protein (118aa)
UPI0003D5A175 related cluster n=1 Tax=unknown RepID=UPI0003D5A175
Uncharacterized protein {ECO:0000313|EMBL:ETI86461.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
septum formation initiator
71_005_scaffold_103_12
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10441..10812)
-----------------
DNA (372bp)
protein (124aa)
50S ribosomal protein L7/L12 n=2 Tax=Megamonas RepID=D4KEE6_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
LSU ribosomal protein L12P
71_005_scaffold_103_13
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(10842..11372)
-----------------
DNA (531bp)
protein (177aa)
UPI0003D67DB4 related cluster n=1 Tax=unknown RepID=UPI0003D67DB4
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
71_005_scaffold_103_14
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(11553..12260)
-----------------
DNA (708bp)
protein (236aa)
UPI0003D60A86 related cluster n=1 Tax=unknown RepID=UPI0003D60A86
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
71_005_scaffold_103_15
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12292..12717)
-----------------
DNA (426bp)
protein (142aa)
UPI0003D5A812 related cluster n=1 Tax=unknown RepID=UPI0003D5A812
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
71_005_scaffold_103_16
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(12789..13340)
-----------------
DNA (552bp)
protein (184aa)
UPI0003D60133 related cluster n=1 Tax=unknown RepID=UPI0003D60133
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
NusG antitermination factor; K02601 transcriptional antiterminator NusG
71_005_scaffold_103_17
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(13350..13577)
-----------------
DNA (228bp)
protein (76aa)
UPI0003D5D105 related cluster n=1 Tax=unknown RepID=UPI0003D5D105
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
71_005_scaffold_103_18
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(13614..13763)
-----------------
DNA (150bp)
protein (50aa)
50S ribosomal protein L33 n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IGN8_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein; K02913 large subunit ribosomal protein L33
71_005_scaffold_103_19
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(14015..14365)
-----------------
DNA (351bp)
protein (117aa)
UPI0003D5AE39 related cluster n=1 Tax=unknown RepID=UPI0003D5AE39
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
71_005_scaffold_103_20
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(14384..14581)
-----------------
DNA (198bp)
protein (66aa)
UPI0003D607F7 related cluster n=1 Tax=unknown RepID=UPI0003D607F7
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
LSU ribosomal protein L35P
71_005_scaffold_103_21
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(14593..14997)
-----------------
DNA (405bp)
protein (135aa)
UPI0003D67593 related cluster n=1 Tax=unknown RepID=UPI0003D67593
Translation initiation factor IF-3 {ECO:0000256|RuleBase:RU000646}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
71_005_scaffold_103_22
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15484..16680
-----------------
DNA (1197bp)
protein (399aa)
UPI0003D687A9 related cluster n=1 Tax=unknown RepID=UPI0003D687A9
UPF0348 protein HMPREF1633_04450 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
hypothetical protein
71_005_scaffold_103_23
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16677..17795
-----------------
DNA (1119bp)
protein (373aa)
UPI0003D6714D related cluster n=1 Tax=unknown RepID=UPI0003D6714D
Uncharacterized protein {ECO:0000313|EMBL:ETI87314.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
transporter, YbiR family
71_005_scaffold_103_24
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(17841..18374)
-----------------
DNA (534bp)
protein (178aa)
bifunctional protein pyrR; K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
UPI0003D5B50A related cluster n=1 Tax=unknown RepID=UPI0003D5B50A
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
71_005_scaffold_103_25
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18374..19282)
-----------------
DNA (909bp)
protein (303aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
UPI0003D6523C related cluster n=1 Tax=unknown RepID=UPI0003D6523C
71_005_scaffold_103_26
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19282..19716)
-----------------
DNA (435bp)
protein (145aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
UPI0003D61785 related cluster n=1 Tax=unknown RepID=UPI0003D61785
71_005_scaffold_103_27
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19842..20819)
-----------------
DNA (978bp)
protein (326aa)
UPI0003D5DF3C related cluster n=1 Tax=unknown RepID=UPI0003D5DF3C
3D protein {ECO:0000313|EMBL:ETI86343.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein
71_005_scaffold_103_28
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(21207..23357)
-----------------
DNA (2151bp)
protein (717aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
polyphosphate kinase; K00937 polyphosphate kinase [EC:2.7.4.1]
UPI0003D600B0 related cluster n=1 Tax=unknown RepID=UPI0003D600B0
71_005_scaffold_103_29
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23354..24907)
-----------------
DNA (1554bp)
protein (518aa)
Exopolyphosphatase-like protein; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1CZT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF11788.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
71_005_scaffold_103_30
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

25084..26679
-----------------
DNA (1596bp)
protein (532aa)
exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
UPI0003D5F105 related cluster n=1 Tax=unknown RepID=UPI0003D5F105
Uncharacterized protein {ECO:0000313|EMBL:ETI86340.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
Displaying items 1-30 of 38 in total

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