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71_007_scaffold_57

Search features with annotation key words

Displaying items 31-60 of 65 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_007_scaffold_57_31
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33961..34731)
DNA (771bp) protein (257aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S724_9BIFI
ABC transporter permease {ECO:0000313|EMBL:KFI90674.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ABC transporter permease; K15599 putative hydroxymethylpyrimidine transport system permease protein
71_007_scaffold_57_32
unknown

Not on your lists

34784..35041
DNA (258bp) protein (86aa)

This feature has no annotations

71_007_scaffold_57_33
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35185..36276
DNA (1092bp) protein (364aa)
Membrane lipoprotein lipid attachment site n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GQ08_BIFLS
Membrane lipoprotein lipid attachment site {ECO:0000313|EMBL:KFI90673.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
membrane lipoprotein lipid attachment site; K15598 putative hydroxymethylpyrimidine transport system substrate-binding protein
71_007_scaffold_57_34
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36280..37509
DNA (1230bp) protein (410aa)
Inosine/uridine-preferring nucleoside hydrolase {ECO:0000313|EMBL:KFI90672.1}; EC=3.2.2.3 {ECO:0000313|EMBL:KFI90672.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Inosine-uridine preferring nucleoside hydrolase n=2 Tax=Bifidobacterium longum RepID=S3DIS9_BIFLN
nucleoside hydrolase
71_007_scaffold_57_35
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37792..38307
DNA (516bp) protein (172aa)
Toxin-antitoxin system, toxin component, GNAT family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CGP7_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31648.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
bar; phosphinothricin N-acetyl transferase
71_007_scaffold_57_36
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38543..39934)
DNA (1392bp) protein (464aa)
Amino acid permease n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUB9_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31647.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
amino acid permease; K03293 amino acid transporter, AAT family
71_007_scaffold_57_37
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40233..41084
DNA (852bp) protein (284aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
nfo; endonuclease IV Nfo (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2]
Probable endonuclease 4 n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VA28_BIFBI
71_007_scaffold_57_38
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41168..41383)
DNA (216bp) protein (72aa)
Transcriptional regulator n=20 Tax=Bifidobacterium RepID=D6D8X5_BIFLN
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:KFI90668.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein; K07727 putative transcriptional regulator
71_007_scaffold_57_39
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41385..41897)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZK69_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31643.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_007_scaffold_57_40
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

42116..43804
DNA (1689bp) protein (563aa)
Dioxygenase n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RHF8_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31642.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
dioxygenase
71_007_scaffold_57_41
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

43809..45110
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RU67_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31641.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_007_scaffold_57_42
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

45188..45991
DNA (804bp) protein (268aa)
Alpha/beta superfamily hydrolase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZTW1_BIFLJ
Carboxylesterase {ECO:0000313|EMBL:KFI90664.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
alpha/beta superfamily hydrolase
71_007_scaffold_57_43
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

46321..46701
DNA (381bp) protein (127aa)
Transcriptional regulator, GntR family n=1 Tax=Olsenella profusa F0195 RepID=U2V5P4_9ACTN
GntR family transcriptional regulator {ECO:0000313|EMBL:KFI90663.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
putative transcriptional regulator
71_007_scaffold_57_44
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

46698..47741
DNA (1044bp) protein (348aa)
ABC transporter related protein n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2NA29_CORGP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31638.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein
71_007_scaffold_57_45
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

47738..48460
DNA (723bp) protein (241aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WKE2_9ACTN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31637.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_007_scaffold_57_46
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

48572..49414
DNA (843bp) protein (281aa)
phosphoglycerate mutase; K01834 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase family protein n=4 Tax=Bifidobacterium bifidum RepID=E4NX79_BIFBP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31636.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_007_scaffold_57_47
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

49672..50652
DNA (981bp) protein (327aa)
CorA-like protein n=5 Tax=Bifidobacterium breve RepID=F6C956_BIFBA
CorA-like protein {ECO:0000313|EMBL:KFI90659.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
CorA-like protein; K03284 magnesium transporter
71_007_scaffold_57_48
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

50733..51611
DNA (879bp) protein (293aa)
Solute binding protein of ABC transporter system n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A1R3_BIFAA
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31634.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter substrate-binding protein
71_007_scaffold_57_49
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


51687..54659
DNA (2973bp) protein (991aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I7A9_BIFBI
71_007_scaffold_57_50
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

54874..55698
DNA (825bp) protein (275aa)
Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUN1_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31632.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
competence protein ComEA; K02237 competence protein ComEA
71_007_scaffold_57_51
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

55755..57461
DNA (1707bp) protein (569aa)
Putative hydrolase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ82_BIFBS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31631.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hydrolase; K02238 competence protein ComEC
71_007_scaffold_57_52
unknown

Not on your lists

57461..57616
DNA (156bp) protein (52aa)

This feature has no annotations

71_007_scaffold_57_53
unknown

Not on your lists

comp(57718..57831)
DNA (114bp) protein (38aa)

This feature has no annotations

71_007_scaffold_57_54
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

57965..63973
DNA (6009bp) protein (2003aa)
Putative uncharacterized protein n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8L438_FRASN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31630.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_007_scaffold_57_55
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

64246..65220
DNA (975bp) protein (325aa)
DNA polymerase III subunit delta n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LDH5_BIFBI
DNA polymerase III subunit delta {ECO:0000313|EMBL:KFI95241.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
holA; DNA polymerase III subunit delta
71_007_scaffold_57_56
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

65255..65848
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A1Q8_BIFAA
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31628.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein; K06925 UPF0079 ATP-binding protein
71_007_scaffold_57_57
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

66083..67000
DNA (918bp) protein (306aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=V6Y1H4_BIFLN
Peptidase M22 {ECO:0000313|EMBL:KFI95239.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
metal-dependent proteases-like protein
71_007_scaffold_57_58
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

67015..67674
DNA (660bp) protein (220aa)
rimI; Ribosomal-protein-S18-alanine acetyltransferase (EC:2.3.1.128)
alanine acetyltransferase n=1 Tax=Bifidobacterium breve RepID=UPI000314B275
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31626.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_007_scaffold_57_59
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


67671..68714
DNA (1044bp) protein (348aa)
metal-dependent protease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidoba
tRNA N6-adenosine threonylcarbamoyltransferase n=3 Tax=Bifidobacterium RepID=E4R2S2_BIFLM
71_007_scaffold_57_trna_1
unknown

Not on your lists

68851..68923
DNA (73bp)
transferRNA Asn
Displaying items 31-60 of 65 in total

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