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71_007_scaffold_137

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Displaying items 1-30 of 69 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_007_scaffold_137_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(188..1873)
DNA (1686bp) protein (562aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A486_BIFAD
71_007_scaffold_137_trna_1
unknown

Not on your lists

2389..2462
DNA (74bp)
transferRNA Pro
71_007_scaffold_137_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2567..3754
DNA (1188bp) protein (396aa)
Major facilitator superfamily MFS_1 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GUS7_BIFLS
Major facilitator superfamily protein {ECO:0000313|EMBL:KFI95920.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_007_scaffold_137_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4051..6258
DNA (2208bp) protein (736aa)
Tetratricopeptide tPR_2 repeat protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I5Y2_BIFBI
Tetratricopeptide repeat protein {ECO:0000313|EMBL:KFI95919.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_007_scaffold_137_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6394..7014
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZW52_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30663.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_007_scaffold_137_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7119..7892)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CG02_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30662.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_007_scaffold_137_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7889..9982)
DNA (2094bp) protein (698aa)
Putative phage shock protein C, PspC n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4IRY7_BIFAP
PspC domain {ECO:0000313|EMBL:KFI95916.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
putative phage shock protein C, PspC
71_007_scaffold_137_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10105..11706
DNA (1602bp) protein (534aa)
PspC domain protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H5Z7_9BIFI
Histidine kinase {ECO:0000313|EMBL:KFI95915.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
histidine kinase sensor of two component system
71_007_scaffold_137_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11703..12383
DNA (681bp) protein (227aa)
two-component response regulator (EC:3.1.1.61)
Two-component response regulator n=4 Tax=Bifidobacterium dentium RepID=D2Q8N6_BIFDB
Two-component response regulator {ECO:0000313|EMBL:KFI95914.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
71_007_scaffold_137_trna_3
unknown

Not on your lists

comp(12455..12539)
DNA (85bp)
transferRNA Ser
71_007_scaffold_137_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12721..14100)
DNA (1380bp) protein (460aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
seryl-tRNA synthase; K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Serine--tRNA ligase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2C8D2_BIFBR
71_007_scaffold_137_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14190..15329
DNA (1140bp) protein (380aa)
Sphingosine kinase n=5 Tax=Bifidobacterium bifidum RepID=I3WJL8_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30656.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
sphK; sphingosine kinase
71_007_scaffold_137_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15359..16192)
DNA (834bp) protein (278aa)
Transcription antiterminator n=5 Tax=Bifidobacterium RepID=I3WJL9_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30655.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
licT; transcription antiterminator
71_007_scaffold_137_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16221..18386)
DNA (2166bp) protein (722aa)
ptsG; PTS system, glucose-specific IIABC component (EC:2.7.1.69); K02755 PTS system, beta-glucosides-specific IIA component [EC:2.7.1.69]; K02756 PTS system, beta-glucosides-specific IIB component [EC:2.7.1.69]; K02757 PTS system, beta-glucosides-specific IIC component
Phosphotransferase system, EIIC n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S6B6_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30654.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_007_scaffold_137_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18672..20348
DNA (1677bp) protein (559aa)
pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific (EC:5.4.2.2); K01835 phosphoglucomutase [EC:5.4.2.2]
Phosphoglucomutase n=4 Tax=Bifidobacterium breve RepID=F9XY05_BIFBU
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30653.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_007_scaffold_137_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22078..22638
DNA (561bp) protein (187aa)
Transcriptional regulator, BadM/Rrf2 family n=15 Tax=Bifidobacterium RepID=D6DC26_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30652.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional regulator
71_007_scaffold_137_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22658..24130
DNA (1473bp) protein (491aa)
Pyridine nucleotide-disulfide oxidoreductase family protein (EC:1.-.-.-)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3A154_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30651.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_007_scaffold_137_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24349..25170
DNA (822bp) protein (274aa)
Nicotinamide mononucleotide transporter PnuC n=2 Tax=Bifidobacterium RepID=C0BTH6_9BIFI
Ribosyl nicotinamide transporter {ECO:0000313|EMBL:KFI95906.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
pnuC; nicotinamide mononucleotide transporter PnuC family protein; K03811 nicotinamide mononucleotide transporter
71_007_scaffold_137_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25172..26311
DNA (1140bp) protein (380aa)
nadR; transcription regulator/NMN adenylyltransferase/ribosylnicotinamide kinase (EC:2.7.7.1 2.7.1.22)
Transcription regulator/NMN adenylyltransferase/ribosylnicotinamide kinase n=2 Tax=Lactococcus lactis RepID=F2HJY6_LACLV
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30649.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_007_scaffold_137_18
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27061..28302
DNA (1242bp) protein (414aa)
Ribonuclease H {ECO:0000313|EMBL:KFI95904.1}; EC=3.1.26.4 {ECO:0000313|EMBL:KFI95904.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
rnh; ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A0B0_BIFAA
71_007_scaffold_137_19
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28571..29269
DNA (699bp) protein (233aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
rpi; ribose 5-phosphate isomerase Rpi (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6]
Ribose-5-phosphate isomerase A n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GAL5_9BIFI
71_007_scaffold_137_20
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29640..29729)
DNA (90bp) protein (30aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DQF6_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI95902.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
71_007_scaffold_137_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29882..30514)
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BQD9_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30645.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_007_scaffold_137_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30639..32048
DNA (1410bp) protein (470aa)
DNA repair protein radA n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJM9_BIFBI
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
radA; DNA repair protein
71_007_scaffold_137_23
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32118..33728
DNA (1611bp) protein (537aa)
S-adenosylhomocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
S-adenosyl-L-homocysteine hydrolase, NAD binding domain protein n=2 Tax=Bifidobacterium dentium RepID=B1S6C4_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30643.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_007_scaffold_137_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33728..35119
DNA (1392bp) protein (464aa)
hydrolase (EC:3.5.4.28)
Amidohydrolase family protein n=2 Tax=Bifidobacterium dentium RepID=B1S6C5_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30642.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_007_scaffold_137_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35194..35685
DNA (492bp) protein (164aa)
Cupin family protein n=4 Tax=Bifidobacterium dentium RepID=B1S6C6_9BIFI
Cupin domain protein, PF06172 family {ECO:0000313|EMBL:KFI95897.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein; K09705 hypothetical protein
71_007_scaffold_137_26
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35672..36481)
DNA (810bp) protein (270aa)
5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase (EC:3.2.2.16 3.2.2.9)
5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RE86_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30640.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_007_scaffold_137_27
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36651..37517
DNA (867bp) protein (289aa)
Amino-acid binding protein for ABC transporter system n=2 Tax=Gardnerella vaginalis RepID=I4M200_GARVA
Amino-acid binding protein for ABC transporter system {ECO:0000313|EMBL:KFI95895.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ABC transporter substrate-binding protein
71_007_scaffold_137_28
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37677..38543
DNA (867bp) protein (289aa)
ABC transporter, permease protein n=4 Tax=Bifidobacterium dentium RepID=B1S6C8_9BIFI
Glutamate transport ATP-binding protein gluA {ECO:0000313|EMBL:KFI95894.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
gluA; Glutamate transport ATP-binding protein gluA; K02029 polar amino acid transport system permease protein
Displaying items 1-30 of 69 in total

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