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71_007_scaffold_214

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Displaying items 1-30 of 53 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_007_scaffold_214_1
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..668)
DNA (666bp) protein (222aa)
Beta-barrel assembly-enhancing protease {ECO:0000256|HAMAP-Rule:MF_00997}; EC=3.4.-.- {ECO:0000256|HAMAP-Rule:MF_00997};; Flags: Precursor;; TaxID=591020 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri serotype X (strain 2002017).;"
Peptidase n=2 Tax=Escherichia coli RepID=R8XL99_ECOLX
yfgC; peptidase, M48 family
71_007_scaffold_214_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

878..1285
DNA (408bp) protein (136aa)
Permease n=1 Tax=Escherichia coli KTE147 RepID=L4JLR1_ECOLX
yfgO; inner membrane protein; K03548 putative permease
Putative permease PerM (= YfgO) {ECO:0000313|EMBL:CDK45021.1}; TaxID=1433131 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS1.;"
71_007_scaffold_214_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1269..1955
DNA (687bp) protein (229aa)
Uncharacterized protein n=16 Tax=Shigella flexneri RepID=I6BQB2_SHIFL
yfgO; putative inner membrane protein; K03548 putative permease
Putative permease perM {ECO:0000313|EMBL:EHP64952.1}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4_1_47FAA.;"
71_007_scaffold_214_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2109..2840)
DNA (732bp) protein (244aa)
Putative formate transporter 1 n=16 Tax=Escherichia coli RepID=G1ZM20_ECOLX
Putative formate transporter 2 (Formate channel 2) {ECO:0000313|EMBL:EGI46259.1}; TaxID=656408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H591.;"
focB; formate transporter; K03459 formate transporter
71_007_scaffold_214_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2862..4874)
DNA (2013bp) protein (671aa)
DNA-binding transcriptional activator, formate sensing n=84 Tax=Enterobacteriaceae RepID=B7LCN1_ECO55
HyfR protein {ECO:0000313|EMBL:CAU98649.1}; TaxID=585055 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain 55989 / EAEC).;"
DNA-binding transcriptional activator, formate sensing
71_007_scaffold_214_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4904..5317)
DNA (414bp) protein (138aa)
hyfJ; processing element hydrogenase 4; K12145 hydrogenase-4 component J [EC:1.-.-.-]
Hydrogenase-4 component J n=28 Tax=Escherichia coli RepID=F4VEU6_ECOLX
Formate hydrogenlyase maturation protein HycH {ECO:0000313|EMBL:EFK47667.1}; TaxID=679206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 119-7.;"
71_007_scaffold_214_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5310..6068)
DNA (759bp) protein (253aa)
hyfI; hydrogenase-4 subunit I (EC:1.-.-.-)
Hydrogenase-4 component I n=3 Tax=Escherichia coli RepID=L4E6R1_ECOLX
Hydrogenase-4 component I {ECO:0000313|EMBL:EQN25463.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
71_007_scaffold_214_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6065..6604)
DNA (540bp) protein (180aa)
Hydrogenase 4 Fe-S subunit n=140 Tax=Escherichia coli RepID=B6I559_ECOSE
hyfH; hydrogenase 4 subunit H
Hydrogenase 4 subunit H {ECO:0000313|EMBL:AFH12313.1}; TaxID=566546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666; / NRRL B-766 / W).;"
71_007_scaffold_214_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6614..7240)
DNA (627bp) protein (209aa)
hyfG; hydrogenase 4, subunit; K12142 hydrogenase-4 component G [EC:1.-.-.-]
Hydrogenase-4 component G n=1 Tax=Escherichia coli TA124 RepID=H1FJH2_ECOLX
Hydrogenase-4 component G {ECO:0000313|EMBL:ELI23778.1}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
71_007_scaffold_214_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7355..8329)
DNA (975bp) protein (325aa)
Hydrogenase 4 membrane subunit n=2 Tax=Escherichia coli RepID=I4ULK0_ECOLX
Respiratory-chain NADH dehydrogenase, 30 Kd subunit {ECO:0000313|EMBL:EGJ04063.1}; TaxID=556266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli D9.;"
hyfG; hydrogenase 4 membrane subunit
71_007_scaffold_214_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8319..9524)
DNA (1206bp) protein (402aa)
hyfF; hydrogenase 4 subunit F; K12141 hydrogenase-4 component F [EC:1.-.-.-]
Hydrogenase-4 component F n=2 Tax=Escherichia coli RepID=S1DDE5_ECOLX
Hydrogenase-4 component F {ECO:0000313|EMBL:EOW05919.1}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
71_007_scaffold_214_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9531..9899)
DNA (369bp) protein (123aa)
hyfF; hydrogenase 4, membrane subunit HyfF; K12141 hydrogenase-4 component F [EC:1.-.-.-]
Hydrogenase 4 membrane subunit n=6 Tax=Enterobacteriaceae RepID=Q3YZ66_SHISS
Hydrogenase {ECO:0000313|EMBL:EZE24275.1}; TaxID=1446741 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:H2 str. 2009C-3686.;"
71_007_scaffold_214_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9904..10554)
DNA (651bp) protein (217aa)
hyfE; hydrogenase 4 membrane subunit; K12140 hydrogenase-4 component E [EC:1.-.-.-]
Hydrogenase-4 component E n=660 Tax=Enterobacteriaceae RepID=HYFE_ECO57
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L {ECO:0000313|EMBL:EII35279.1}; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
71_007_scaffold_214_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10566..10931)
DNA (366bp) protein (122aa)
Hydrogenase 4 subunit D n=4 Tax=Escherichia coli RepID=M4JTW2_ECOLX
hydrogenase 4 subunit D
Hydrogenase 4 subunit D {ECO:0000313|EMBL:KFD75564.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
71_007_scaffold_214_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10967..11710)
DNA (744bp) protein (248aa)
Hydrogenase 4 subunit D n=27 Tax=Escherichia coli RepID=E1J3F7_ECOLX
Putative membrane protein {ECO:0000313|EMBL:EHX29365.1}; TaxID=868191 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12A.;"
hydrogenase 4 subunit D
71_007_scaffold_214_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11686..11796)
DNA (111bp) protein (37aa)
Hydrogenase 4 subunit D n=47 Tax=Escherichia coli RepID=C6EKM8_ECOBD
hydrogenase 4 subunit D
Hydantoin racemase {ECO:0000313|EMBL:KDV31447.1}; TaxID=1446599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O146:H21 str. 2010C-3325.;"
71_007_scaffold_214_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11813..12760)
DNA (948bp) protein (316aa)
hyfC; hydrogenase-4 component C; K12138 hydrogenase-4 component C [EC:1.-.-.-]
Hydrogenase-4 component C n=13 Tax=Escherichia coli RepID=E7UKW2_ECOLX
Hydrogenase 3 membrane subunit {ECO:0000313|EMBL:KHJ21416.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
71_007_scaffold_214_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12771..14120)
DNA (1350bp) protein (450aa)
hyfB; hydrogenase 4 subunit B; K12137 hydrogenase-4 component B [EC:1.-.-.-]
Hydrogenase 4, component B n=11 Tax=Escherichia coli RepID=H5KWU7_ECOLX
NADH-ubiquinone/plastoquinone family protein {ECO:0000313|EMBL:ESA62639.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
71_007_scaffold_214_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14117..14788)
DNA (672bp) protein (224aa)
Hydrogenase-4, subunit B HyfB n=199 Tax=Enterobacteriaceae RepID=F4M6S6_ECOLX
hydrogenase 4 subunit B
Hydrogenase 4 subunit B {ECO:0000313|EMBL:EFJ88060.1}; TaxID=749533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 84-1.;"
71_007_scaffold_214_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14788..15405)
DNA (618bp) protein (206aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; K12136 hydrogenase-4 component A [EC:1.-.-.-]
Hydrogenase-4 component A {ECO:0000313|EMBL:KEO09170.1}; EC=1.-.-.- {ECO:0000313|EMBL:KEO09170.1};; TaxID=1444179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-177-06_S3_C3.;"
4Fe-4S ferredoxin iron-sulfur binding domain protein n=48 Tax=Escherichia RepID=B1IWH8_ECOLC
71_007_scaffold_214_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15658..16128)
DNA (471bp) protein (157aa)
bcp; thioredoxin-dependent thiol peroxidase (EC:1.11.1.15); K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Thioredoxin-dependent thiol peroxidase {ECO:0000313|EMBL:EIG82507.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EIG82507.1};; TaxID=869669 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1.2741.;"
Putative peroxiredoxin bcp n=1410 Tax=Enterobacteriaceae RepID=BCP_ECO57
71_007_scaffold_214_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16128..16700)
DNA (573bp) protein (191aa)
Glycine cleavage system transcriptional repressor n=1140 Tax=Enterobacteriaceae RepID=GCVR_ECOLI
gcvR; glycine cleavage system transcriptional repressor; K03567 glycine cleavage system transcriptional repressor
Glycine cleavage system transcriptional repressor {ECO:0000313|EMBL:ELD98367.1}; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE51.;"
71_007_scaffold_214_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16846..17724
DNA (879bp) protein (293aa)
dapA; dihydrodipicolinate synthase DapA; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1005567 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli N1.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1113 Tax=Enterobacteriaceae RepID=DAPA_ECO24
71_007_scaffold_214_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17741..18775
DNA (1035bp) protein (345aa)
Outer membrane protein assembly factor BamC n=643 Tax=Enterobacteriaceae RepID=BAMC_ECOLI
nlpB; lipoprotein; K07287 lipoprotein-34
Outer membrane protein assembly factor BamC {ECO:0000256|HAMAP-Rule:MF_00924}; Flags: Precursor;; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
71_007_scaffold_214_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18686..18916)
DNA (231bp) protein (77aa)
Escherichia coli IMT2125 genomic chromosome, IMT2125 n=179 Tax=Enterobacteriaceae RepID=J7R3R8_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQY18300.1}; TaxID=1281218 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3212-1.;"
71_007_scaffold_214_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18988..19701
DNA (714bp) protein (238aa)
purC; phosphoribosylaminoimidazole-succinocarboxamide synthetase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1125638 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.1.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1338 Tax=Enterobacteriaceae RepID=PUR7_ECO24
71_007_scaffold_214_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19855..20082
DNA (228bp) protein (76aa)
Toxin-antitoxin system, antitoxin component, AbrB family n=2 Tax=Escherichia coli RepID=E1INH2_ECOLX
transcriptionnal regulation protein
Post-segregational killing toxin {ECO:0000313|EMBL:EHX25929.1}; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
71_007_scaffold_214_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20082..20480
DNA (399bp) protein (133aa)
tRNA(fMet)-specific endonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1446735 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O26:NM str. 2010C-4788.;"
tRNA(fMet)-specific endonuclease VapC n=190 Tax=Enterobacteriaceae RepID=J7R740_ECOLX
mvpA; putative post-segregational-killing anti-toxin; K07062
71_007_scaffold_214_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20627..21490
DNA (864bp) protein (288aa)
Uncharacterized protein n=59 Tax=Escherichia coli RepID=J7Q8T9_ECOLX
hypothetical protein
YpfJ protein, zinc metalloprotease superfamily {ECO:0000313|EMBL:AIF64350.1}; TaxID=340184 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B7A.;"
71_007_scaffold_214_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21505..23520
DNA (2016bp) protein (672aa)
tRNA(Met) cytidine acetyltransferase TmcA {ECO:0000256|HAMAP-Rule:MF_01886}; EC=2.3.1.193 {ECO:0000256|HAMAP-Rule:MF_01886};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
ypfI; putative hydrolase; K06957 tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
tRNA(Met) cytidine acetyltransferase TmcA n=76 Tax=Escherichia coli RepID=C8TVG8_ECO26
Displaying items 1-30 of 53 in total

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