ggKbase home page

71_007_scaffold_467

Search features with annotation key words

Displaying items 1-30 of 52 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_007_scaffold_467_1
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2198)
DNA (2196bp) protein (732aa)
Protein yhgF n=249 Tax=Enterobacteriaceae RepID=A8A5L5_ECOHS
yhgF; putative transcriptional accessory protein
Putative transcriptional accessory protein {ECO:0000313|EMBL:EFW56803.1}; TaxID=932676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii ATCC 9905.;"
71_007_scaffold_467_2
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2295..2771)
DNA (477bp) protein (159aa)
Transcription elongation factor GreB n=1068 Tax=Enterobacteriaceae RepID=GREB_ECO57
greB; transcription elongation factor; K04760 transcription elongation factor GreB
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=766150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri K-315.;"
71_007_scaffold_467_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2999..3718
DNA (720bp) protein (240aa)
Transcriptional regulatory protein OmpR n=2244 Tax=Bacteria RepID=OMPR_ECO57
osmolarity response regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
Transcriptional regulatory protein OmpR {ECO:0000313|EMBL:EFJ82704.1}; TaxID=749531 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 69-1.;"
71_007_scaffold_467_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3715..4998
DNA (1284bp) protein (428aa)
envZ; osmolarity sensor protein; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1446704 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O174:H8 str. 04-3038.;"
Sensory histidine kinase EnvZ in two-component regulatory system with OmpR n=23 Tax=Escherichia coli RepID=C8TJJ4_ECO26
71_007_scaffold_467_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5030..5326)
DNA (297bp) protein (99aa)
Uncharacterized protein n=294 Tax=Escherichia RepID=B1LHK3_ECOSM
HTH-type transcriptional regulator yiaG; K07726 putative transcriptional regulator
Toxin-antitoxin system, antitoxin component, Xre family {ECO:0000313|EMBL:EGI43964.1}; TaxID=656408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H591.;"
71_007_scaffold_467_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5385..5702)
DNA (318bp) protein (106aa)
Uncharacterized protein n=284 Tax=Escherichia RepID=B7L4T2_ECO55
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDW82105.1}; TaxID=1444081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S1_C2.;"
71_007_scaffold_467_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5819..6013)
DNA (195bp) protein (65aa)
pck; phosphoenolpyruvate carboxykinase; K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1444212 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S4_C1.;"
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Escherichia coli KTE136 RepID=L4HE65_ECOLX
71_007_scaffold_467_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5974..7407)
DNA (1434bp) protein (478aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=679202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 85-1.;"
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Escherichia coli B41 RepID=I2ZPP1_ECOLX
71_007_scaffold_467_9
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7786..8913
DNA (1128bp) protein (376aa)
Putative membrane protein n=1 Tax=Escherichia coli DEC14A RepID=H5MZX7_ECOLX
Putative uncharacterized protein {ECO:0000313|EMBL:EGI90715.1}; TaxID=766141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 5216-82.;"
yhgE; hypothetical protein
71_007_scaffold_467_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8873..9397
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Escherichia coli 179100 RepID=N3IS48_ECOLX
yhgE; hypothetical protein
Putative inner membrane protein {ECO:0000313|EMBL:EJE65690.1}; TaxID=1165944 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O111:H8 str. CVM9634.;"
71_007_scaffold_467_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9575..10363)
DNA (789bp) protein (263aa)
33 kDa chaperonin n=130 Tax=Escherichia coli RepID=HSLO_ECOLU
hslO; Hsp33-like chaperonin; K04083 molecular chaperone Hsp33
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=1182725 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE146.;"
71_007_scaffold_467_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10388..10789)
DNA (402bp) protein (134aa)
Heat shock protein 15 n=267 Tax=Enterobacteriaceae RepID=J7RA21_ECOLX
hslR; ribosome-associated heat shock protein Hsp15; K04762 ribosome-associated heat shock protein Hsp15
Heat shock protein 15 {ECO:0000256|PIRNR:PIRNR016821}; TaxID=1280986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 36 (4-5675286).;"
71_007_scaffold_467_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10800..11468)
DNA (669bp) protein (223aa)
Putative phosphatase n=2 Tax=Shigella flexneri RepID=I0VHS3_SHIFL
HAD hydrolase, IA family; K07025 putative hydrolase of the HAD superfamily
Putative phosphatase {ECO:0000313|EMBL:EGI48620.1}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H299.;"
71_007_scaffold_467_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11533..12969)
DNA (1437bp) protein (479aa)
Inner membrane protein n=2 Tax=Escherichia coli RepID=L2Y981_ECOLX
Intracellular growth attenuator protein igaA
Membrane protein IgaA {ECO:0000313|EMBL:EOU87364.1}; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
71_007_scaffold_467_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13959..14519
DNA (561bp) protein (187aa)
nudE; ADP-ribose diphosphatase NudE (EC:3.6.1.-); K08312 ADP-ribose diphosphatase [EC:3.6.1.-]
ADP compounds hydrolase NudE n=558 Tax=Enterobacteriaceae RepID=NUDE_ECOLI
ADP compounds hydrolase NudE {ECO:0000313|EMBL:ESA62322.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
71_007_scaffold_467_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14684..17236)
DNA (2553bp) protein (851aa)
mrcA; peptidoglycan synthetase; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Penicillin-binding protein 1A n=242 Tax=Escherichia coli RepID=B5YTU5_ECO5E
Penicillin-binding protein 1A {ECO:0000313|EMBL:ELE57328.1}; TaxID=1182683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE76.;"
71_007_scaffold_467_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17394..18107
DNA (714bp) protein (238aa)
Uncharacterized protein n=42 Tax=Escherichia coli RepID=D3QTL1_ECOCB
putative pilus assembly protein; K12288 pilus assembly protein HofM
YrfD protein {ECO:0000313|EMBL:EFF04357.2}; TaxID=550676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B185.;"
71_007_scaffold_467_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18252..18632
DNA (381bp) protein (127aa)
Fimbrial assembly family protein n=1 Tax=Escherichia coli 2730350 RepID=N2MVS7_ECOLX
hofN; inner membrane protein; K12289 pilus assembly protein HofN
Fimbrial assembly protein PilN {ECO:0000313|EMBL:EII36061.1}; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
71_007_scaffold_467_19
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18616..18969
DNA (354bp) protein (118aa)
Uncharacterized protein n=78 Tax=Enterobacteriaceae RepID=A7ZSR8_ECO24
Type IV pilus biogenesis protein PilO {ECO:0000313|EMBL:CDK77226.1}; TaxID=1432547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae IS22.;"
yrfB; hypothetical protein
71_007_scaffold_467_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18959..19363
DNA (405bp) protein (135aa)
Putative DNA utilization protein HofP n=429 Tax=Enterobacteriaceae RepID=HOFP_ECOLI
hypothetical protein; K12291 pilus assembly protein HofP
Uncharacterized protein {ECO:0000313|EMBL:EMW92768.1}; TaxID=1125634 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 174750.;"
71_007_scaffold_467_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19305..20513
DNA (1209bp) protein (403aa)
Fimbrial transporter n=95 Tax=Enterobacteriaceae RepID=B7L4R8_ECO55
hofQ; outer membrane porin HofQ
Protein transport protein HofQ {ECO:0000313|EMBL:EGI43948.1}; TaxID=656408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H591.;"
71_007_scaffold_467_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20914..21435
DNA (522bp) protein (174aa)
aroK; shikimate kinase I (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase 1 {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK 1 {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
Shikimate kinase 1 n=21 Tax=Escherichia coli RepID=C3SQ92_ECOLX
71_007_scaffold_467_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21492..22580
DNA (1089bp) protein (363aa)
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000313|EMBL:AFH13203.1}; EC=4.2.3.4 {ECO:0000313|EMBL:AFH13203.1};; TaxID=566546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666; / NRRL B-766 / W).;"
3-dehydroquinate synthase n=285 Tax=Enterobacteriaceae RepID=AROB_ECO24
71_007_scaffold_467_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22672..23958
DNA (1287bp) protein (429aa)
DamX protein n=67 Tax=Escherichia RepID=E3PLJ5_ECOH1
DamX protein; K03112 DamX protein
DamX protein {ECO:0000313|EMBL:EGB69923.1}; TaxID=656449 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TW10509.;"
71_007_scaffold_467_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24065..24901
DNA (837bp) protein (279aa)
dam; DNA adenine methylase (EC:2.1.1.72)
Site-specific DNA-methyltransferase (adenine-specific) {ECO:0000256|RuleBase:RU361257}; EC=2.1.1.72 {ECO:0000256|RuleBase:RU361257};; TaxID=1444123 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C1.;"
DNA adenine methylase n=657 Tax=Enterobacteriaceae RepID=DMA_ECO57
71_007_scaffold_467_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24919..25596
DNA (678bp) protein (226aa)
rpe; Ribulose-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1446599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O146:H21 str. 2010C-3325.;"
Ribulose-phosphate 3-epimerase n=1400 Tax=Enterobacteriaceae RepID=RPE_ECO57
71_007_scaffold_467_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25589..26071
DNA (483bp) protein (161aa)
Phosphoglycolate phosphatase {ECO:0000256|HAMAP-Rule:MF_00495, ECO:0000256|SAAS:SAAS00077902}; Short=PGP {ECO:0000256|HAMAP-Rule:MF_00495};; Short=PGPase {ECO:0000256|HAMAP-Rule:MF_00495};; EC=3.1.3.18 {ECO:0000256|HAMAP-Rule:MF_00495, ECO:0000256|SAAS:SAAS00077902};; TaxID=1125638 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.1.;"
gph; phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase n=38 Tax=Escherichia coli RepID=D8E883_ECOLX
71_007_scaffold_467_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26179..27213
DNA (1035bp) protein (345aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
Tryptophan--tRNA ligase n=1 Tax=Escherichia coli H120 RepID=E9XDM7_ECOLX
trpS; tryptophanyl-tRNA synthetase
71_007_scaffold_467_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27429..28289
DNA (861bp) protein (287aa)
Uncharacterized protein n=6 Tax=Escherichia coli RepID=I2SGH7_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ESC90161.1}; TaxID=1268977 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113302.;"
yhfZ; hypothetical protein
71_007_scaffold_467_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28306..28650
DNA (345bp) protein (115aa)
Uncharacterized protein YhfY n=494 Tax=Enterobacteriaceae RepID=YHFY_ECOLI
hypothetical protein
PRD domain protein {ECO:0000313|EMBL:KEN87325.1}; TaxID=1444123 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C1.;"
Displaying items 1-30 of 52 in total

View Taxonomy