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71_007_scaffold_833

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_007_scaffold_833_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(245..913)
DNA (669bp) protein (223aa)
UPF0758 protein YicR n=206 Tax=Enterobacteriaceae RepID=YICR_ECO55
hypothetical protein
UPF0758 protein YicR {ECO:0000256|HAMAP-Rule:MF_00018}; TaxID=1444180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-210-07_S3_C3.;"
71_007_scaffold_833_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1085..2305
DNA (1221bp) protein (407aa)
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:6.3.2.5)
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase {ECO:0000313|EMBL:KDV62983.1}; EC=4.1.1.36 {ECO:0000313|EMBL:KDV62983.1};; EC=6.3.2.5 {ECO:0000313|EMBL:KDV62983.1};; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O128:H2 str. 2011C-3317.;"
Fused 4'-phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine synthetase, FMN-binding n=64 Tax=Enterobacteriaceae RepID=B7L762_ECO55
71_007_scaffold_833_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2283..2741
DNA (459bp) protein (153aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase; K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1444231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-156-04_S4_C2.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1234 Tax=Enterobacteriaceae RepID=DUT_ECO5E
71_007_scaffold_833_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2848..3444
DNA (597bp) protein (199aa)
Nucleoid occlusion factor SlmA n=1019 Tax=Enterobacteriaceae RepID=SLMA_ECO24
slmA; cell division inhibitor
Nucleoid occlusion factor SlmA {ECO:0000256|HAMAP-Rule:MF_01839, ECO:0000256|SAAS:SAAS00010477}; TaxID=1446698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:NM str. 08-4540.;"
71_007_scaffold_833_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3481..4122)
DNA (642bp) protein (214aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=749539 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 117-3.;"
Orotate phosphoribosyltransferase n=39 Tax=Escherichia coli RepID=PYRE_ECO24
71_007_scaffold_833_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4188..4904)
DNA (717bp) protein (239aa)
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56]
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1432559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC41.;"
Ribonuclease PH n=1033 Tax=Enterobacteriaceae RepID=RNPH_ECO24
71_007_scaffold_833_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5031..5774
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Escherichia coli ThroopD RepID=M9DQC4_ECOLX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EFE61036.2}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
71_007_scaffold_833_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5995..6810
DNA (816bp) protein (272aa)
DNA-damage-inducible protein n=39 Tax=Escherichia coli RepID=B6I3M3_ECOSE
dinD; DNA-damage-inducible protein D; K14623 DNA-damage-inducible protein D
Putative DNA-damage-inducible protein D {ECO:0000313|EMBL:EID68547.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
71_007_scaffold_833_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7102..7719
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Escherichia coli M863 RepID=E9YW54_ECOLX
yicG; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFJ83007.1}; TaxID=749531 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 69-1.;"
71_007_scaffold_833_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7716..8780)
DNA (1065bp) protein (355aa)
DNA ligase B {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019096}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019091};; Polydeoxyribonucleotide synthase [NAD(+)] B {ECO:0000256|HAMAP-Rule:MF_01587}; TaxID=1280986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 36 (4-5675286).;"
DNA ligase B n=2 Tax=Escherichia coli RepID=I4UU75_ECOLX
NAD-dependent DNA ligase LigB
71_007_scaffold_833_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8764..9372)
DNA (609bp) protein (203aa)
ligB; NAD-dependent DNA ligase LigB (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2]
DNA ligase B {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019096}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019091};; Polydeoxyribonucleotide synthase [NAD(+)] B {ECO:0000256|HAMAP-Rule:MF_01587}; TaxID=1269003 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908658.;"
DNA ligase B n=1 Tax=Escherichia coli KOEGE 44 (106a) RepID=T8G3D2_ECOLX
71_007_scaffold_833_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9630..10253
DNA (624bp) protein (208aa)
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
Guanylate kinase n=1157 Tax=Enterobacteriaceae RepID=KGUA_ECOL5
71_007_scaffold_833_13
Yersinia pestis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10308..10490
DNA (183bp) protein (61aa)
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; Short=RNAP omega subunit {ECO:0000255|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00366};; RNA polymerase omega subunit {ECO:0000255|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; TaxID=386656 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pestis (strain Pestoides F).;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Yersinia pestis (strain Pestoides F) RepID=RPOZ_YERPP
71_007_scaffold_833_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10509..12617
DNA (2109bp) protein (703aa)
(p)ppGpp synthetase I SpoT/RelA (EC:3.1.7.2)
Guanosine 3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase {ECO:0000313|EMBL:EFK53064.1}; EC=3.1.7.2 {ECO:0000313|EMBL:EFK53064.1};; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase n=926 Tax=Enterobacteriaceae RepID=SPOT_ECO57
71_007_scaffold_833_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12657..13313
DNA (657bp) protein (219aa)
tRNA (Guanosine-2'-O-) methyltransferase n=1 Tax=Escherichia coli E128010 RepID=E7HWL7_ECOLX
tRNA guanosine-2'-O-methyltransferase
tRNA (Guanosine-2'-O-) methyltransferase {ECO:0000313|EMBL:EKJ81119.1}; TaxID=1169664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli AD30.;"
71_007_scaffold_833_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13319..14212
DNA (894bp) protein (298aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:END49743.1}; EC=3.6.4.12 {ECO:0000313|EMBL:END49743.1};; TaxID=1125638 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.1.;"
ATP-dependent DNA helicase RecG n=4 Tax=Escherichia coli RepID=M9A8X2_ECOLX
recG; ATP-dependent DNA helicase RecG
71_007_scaffold_833_17
Dickeya dadantii, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14178..15287
DNA (1110bp) protein (370aa)
ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
ATP-dependent DNA helicase RecG n=1 Tax=Dickeya dadantii (strain Ech703) RepID=C6C696_DICDC
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:ACS87705.1}; TaxID=579405 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya dadantii (strain Ech703).;"
71_007_scaffold_833_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15272..16138)
DNA (867bp) protein (289aa)
Uncharacterized protein n=424 Tax=Escherichia coli RepID=J7QXD5_ECOLX
ybl159; ybl159
Uncharacterized protein {ECO:0000313|EMBL:ADD58858.1}; TaxID=701177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O55:H7 (strain CB9615 / EPEC).;"
71_007_scaffold_833_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16141..17256)
DNA (1116bp) protein (372aa)
Sodium/glutamate symporter carrier protein n=1 Tax=Escherichia coli KTE203 RepID=L4PQQ6_ECOLX
sodium/glutamate symporter
Sodium/glutamate symporter carrier protein {ECO:0000313|EMBL:ESP06594.1}; TaxID=1280986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 36 (4-5675286).;"
71_007_scaffold_833_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17536..18927
DNA (1392bp) protein (464aa)
Xanthine permease XanP n=1200 Tax=root RepID=XANP_ECO57
yicE; xanthine permease
XanP xanthine NCS2 transporter {ECO:0000313|EMBL:EHW11296.1}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
71_007_scaffold_833_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19048..20646
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Escherichia coli UMEA 3065-1 RepID=T8P305_ECOLX
AsmA family protein
AsmA family protein {ECO:0000313|EMBL:ABV20761.1}; TaxID=331111 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O139:H28 (strain E24377A / ETEC).;"
71_007_scaffold_833_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20805..20996)
DNA (192bp) protein (64aa)
glycoside hydrolase family protein; K01811 alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
Putative alpha-glucosidase n=1 Tax=Escherichia coli O111:H8 str. CVM9634 RepID=K4USY6_ECOLX
Putative alpha-glucosidase {ECO:0000313|EMBL:EJE62365.1}; TaxID=1165944 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O111:H8 str. CVM9634.;"
71_007_scaffold_833_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20993..23116)
DNA (2124bp) protein (708aa)
yicI; alpha-xylosidase; K01811 alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
Glycosyl hydrolase, family 31 n=2 Tax=Escherichia coli RepID=D8ARI2_ECOLX
Alpha-glucosidase {ECO:0000313|EMBL:KJW31033.1}; Family 31 glucosidase YicI {ECO:0000313|EMBL:AJE58225.1}; Strain O157 SvETEC scaffold31.1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ45106.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
71_007_scaffold_833_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23126..24508)
DNA (1383bp) protein (461aa)
Inner membrane symporter YicJ n=478 Tax=Enterobacteriaceae RepID=YICJ_ECOLI
transporter
Sugar (Glycoside-Pentoside-Hexuronide) transporter {ECO:0000313|EMBL:EKJ81113.1}; TaxID=1169664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli AD30.;"
71_007_scaffold_833_trna_1
unknown

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24801..24891
DNA (91bp)
transferRNA SeC(p)
71_007_scaffold_833_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25528..26712
DNA (1185bp) protein (395aa)
Sugar efflux system n=51 Tax=Escherichia coli RepID=J9ZF60_ECO14
sugar efflux system
Sugar efflux system {ECO:0000313|EMBL:AFS71983.1}; TaxID=1133852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O104:H4 (strain 2011C-3493).;"
71_007_scaffold_833_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26823..27677
DNA (855bp) protein (285aa)
Putative membrane protein n=1 Tax=Escherichia coli O78:H11 (strain H10407 / ETEC) RepID=E3PN71_ECOH1
hypothetical protein
Membrane protein {ECO:0000313|EMBL:AKF22881.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
71_007_scaffold_833_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27681..28499)
DNA (819bp) protein (273aa)
Lipoprotein n=13 Tax=Escherichia coli RepID=D8EGV9_ECOLX
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
nlpA; cytoplasmic membrane lipoprotein-28; K02073 D-methionine transport system substrate-binding protein
Displaying 28 items

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