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71_007_scaffold_30

Search features with annotation key words

Displaying items 1-30 of 251 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_007_scaffold_30_1
unknown

Not on your lists

comp(2..1795)
DNA (1794bp) protein (598aa)

This feature has no annotations

71_007_scaffold_30_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(2056..2325)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=8 Tax=Bifidobacterium RepID=E3EMP0_BIFBS
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_30_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2458..3174)
DNA (717bp) protein (239aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VBF8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50923.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
the export of O-antigen and teichoic acid related membrane protein
71_007_scaffold_30_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3367..6786)
DNA (3420bp) protein (1140aa)
NagC/XylR-type transciptional regulator (EC:3.2.1.35)
NagC/XylR-type transciptional regulator n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GTH5_9BIFI
NagC/XylR-type transciptional regulator {ECO:0000313|EMBL:CDB24541.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_30_trna_5
unknown

Not on your lists

comp(7082..7152)
DNA (71bp)
transferRNA Gly
71_007_scaffold_30_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7262..8140)
DNA (879bp) protein (293aa)
biotin--acetyl-CoA-carboxylase ligase n=1 Tax=Bifidobacterium bifidum RepID=UPI0002FA6EC0
birA; biotin acetyl-CoA-carboxylase synthetase
Uncharacterized protein {ECO:0000313|EMBL:ADO53782.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_30_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8464..9027)
DNA (564bp) protein (188aa)
acpS; Holo-[acyl-carrier-protein] synthase (EC:2.7.8.7)
4'-phosphopantetheinyl transferase n=4 Tax=Bifidobacterium bifidum RepID=E3EN50_BIFBS
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:ADO53783.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_30_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9402..18803)
DNA (9402bp) protein (3134aa)
fas; fatty acid synthase subunit alpha (EC:2.3.1.86)
MaoC-like protein n=2 Tax=Bifidobacterium bifidum RepID=E4VBF4_BIFBI
MaoC-like protein {ECO:0000313|EMBL:EFR50919.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_007_scaffold_30_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18907..20541)
DNA (1635bp) protein (545aa)
accD; acetyl-/propionyl-CoA carboxylase subunit beta AccD (EC:6.4.1.3)
Carboxyl transferase domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBF3_BIFBI
Carboxyl transferase domain protein {ECO:0000313|EMBL:EFR50918.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_007_scaffold_30_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20541..22451)
DNA (1911bp) protein (637aa)
accC; acetyl-/propionyl-CoA carboxylase alpha chain; K11263 acetyl-/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.3.4.14]
Acetyl-/propionyl-CoA carboxylase alpha chain n=4 Tax=Bifidobacterium RepID=E3EN53_BIFBS
Acetyl-/propionyl-CoA carboxylase alpha chain {ECO:0000313|EMBL:ADO53786.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_30_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22698..23279
DNA (582bp) protein (194aa)
BioY protein n=5 Tax=Bifidobacterium RepID=E4NZL3_BIFBP
bioY; transmembranal protein
BioY protein {ECO:0000313|EMBL:CDB23166.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_30_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23458..24300)
DNA (843bp) protein (281aa)
biotin-(acetyl-CoA carboxylase) ligase (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DST0_BIFBI
Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000313|EMBL:ERI82801.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98837.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_007_scaffold_30_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24425..26545
DNA (2121bp) protein (707aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJZ7_BIFBI
sugar ABC transporter periplasmic protein
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:AFL05210.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_007_scaffold_30_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26576..27394
DNA (819bp) protein (273aa)
Transcriptional regulator n=9 Tax=Bifidobacterium RepID=E4NZL6_BIFBP
putative transcriptional regulator, PucR family protein
Putative transcriptional regulator, PucR family protein {ECO:0000313|EMBL:AFL05211.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_007_scaffold_30_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27562..28263)
DNA (702bp) protein (234aa)
Endonuclease NucS {ECO:0000256|HAMAP-Rule:MF_00722}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00722};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Endonuclease NucS n=4 Tax=Bifidobacterium bifidum RepID=E3EN58_BIFBS
hypothetical protein; K07503 hypothetical protein
71_007_scaffold_30_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28626..28928)
DNA (303bp) protein (101aa)
ATP synthase subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
AtpC ATP synthase epsilon chain n=8 Tax=Bifidobacterium RepID=E4NZL8_BIFBP
AtpC ATP synthase epsilon chain {ECO:0000313|EMBL:CDB23080.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_30_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28928..30184)
DNA (1257bp) protein (419aa)
atpD; ATP synthase subunit beta; K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ATP synthase subunit beta n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DMN1_BIFBI
71_007_scaffold_30_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30213..31310)
DNA (1098bp) protein (366aa)
atpG; ATP synthase F1 subunit gamma (EC:3.6.3.14)
ATP synthase gamma chain n=5 Tax=Bifidobacterium bifidum RepID=E4NZM0_BIFBP
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_007_scaffold_30_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31314..32903)
DNA (1590bp) protein (530aa)
atpA; ATP synthase subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
ATP synthase subunit alpha n=6 Tax=Bifidobacterium bifidum RepID=E4NZM1_BIFBP
71_007_scaffold_30_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32977..33804)
DNA (828bp) protein (276aa)
atpH; ATP synthase subunit delta; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]
ATP synthase subunit delta n=2 Tax=Bifidobacterium bifidum RepID=E4VBE1_BIFBI
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_007_scaffold_30_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33834..34361)
DNA (528bp) protein (176aa)
atpF; ATP synthase F0 subunit B (EC:3.6.3.14)
ATP synthase subunit b n=7 Tax=Bifidobacterium RepID=E3EN64_BIFBS
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_007_scaffold_30_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34386..34616)
DNA (231bp) protein (77aa)
atpE; ATP synthase subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
ATP synthase C chain n=8 Tax=Bifidobacterium RepID=E3EN65_BIFBS
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_007_scaffold_30_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34728..35540)
DNA (813bp) protein (271aa)
atpB; ATP synthase F0 subunit A (EC:3.6.3.14)
ATP synthase subunit a n=8 Tax=Bifidobacterium RepID=E3EN66_BIFBS
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_30_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36070..37104)
DNA (1035bp) protein (345aa)
metA; homoserine O-succinyl transferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Homoserine O-succinyltransferase n=5 Tax=Bifidobacterium RepID=E4NZM6_BIFBP
71_007_scaffold_30_trna_1
unknown

Not on your lists

37272..37345
DNA (74bp)
transferRNA Met
71_007_scaffold_30_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37475..38254
DNA (780bp) protein (260aa)
Site-specific recombinase XerD n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DA79_BIFLN
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBK71082.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
71_007_scaffold_30_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38265..38567
DNA (303bp) protein (101aa)
Uncharacterized protein {ECO:0000313|EMBL:KFI72841.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
71_007_scaffold_30_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38587..38898
DNA (312bp) protein (104aa)
Uncharacterized protein {ECO:0000313|EMBL:KFI72842.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
71_007_scaffold_30_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38961..39092)
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZIN6_BIFBR
phage holin-like protein
Phage holin-like protein {ECO:0000313|EMBL:ACD98580.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
71_007_scaffold_30_28

Not on your lists

comp(39225..40040)
DNA (816bp) protein (272aa)
Bacteriophage endolysin n=2 Tax=root RepID=E4P1P0_BIFBP
bacteriophage endolysin
Bacteriophage endolysin {ECO:0000313|EMBL:ADD65699.1}; TaxID=743964 species="Viruses; unclassified phages.;" source="Bifidobacterium phage Bbif-1.;"
Displaying items 1-30 of 251 in total

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