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71_007_scaffold_61

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Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_007_scaffold_61_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..984)
DNA (984bp) protein (328aa)
Elongation factor Tu n=6 Tax=Bifidobacterium bifidum RepID=E3EN22_BIFBS
tuf; translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_007_scaffold_61_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1158..3287)
DNA (2130bp) protein (710aa)
Elongation factor G n=8 Tax=Bifidobacterium RepID=E3EN23_BIFBS
fusA; translation elongation factor G; K02355 elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_007_scaffold_61_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3315..3785)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=9 Tax=Bacteria RepID=E3EN24_BIFBS
rpsG; 30S ribosomal protein S7
Ribosomal protein S7 {ECO:0000256|RuleBase:RU003620}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_61_4
Gardnerella vaginalis, Gardnerella, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3791..4162)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=43 Tax=Bifidobacteriaceae RepID=RS12_BIFLO
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1261057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella.;" source="Gardnerella vaginalis JCP7275.;"
71_007_scaffold_61_trna_2
unknown

Not on your lists

comp(4480..4552)
DNA (73bp)
transferRNA His
71_007_scaffold_61_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5378..6403
DNA (1026bp) protein (342aa)
low specificity-threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5]
Low specificity-threonine aldolase {ECO:0000313|EMBL:KFI43315.1}; EC=4.1.2.48 {ECO:0000313|EMBL:KFI43315.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Low specificity-threonine aldolase n=2 Tax=Bifidobacterium bifidum RepID=E3EN26_BIFBS
71_007_scaffold_61_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6428..7618)
DNA (1191bp) protein (397aa)
Glycosyltransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXV3_BIFBP
glycosyltransferase
Putative glycosyl transferase {ECO:0000313|EMBL:EKF16554.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_007_scaffold_61_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7955..11869)
DNA (3915bp) protein (1305aa)
NPCBM/NEW2 domain protein n=2 Tax=Bifidobacterium bifidum RepID=E4VAV7_BIFBI
NPCBM/NEW2 domain protein {ECO:0000313|EMBL:EFR50707.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
71_007_scaffold_61_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12083..13363
DNA (1281bp) protein (427aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriale
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VAV8_BIFBI
purT; putative phosphoribosylglycinamideformyl transferase
71_007_scaffold_61_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13651..14421
DNA (771bp) protein (257aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=8 Tax=Bifidobacterium RepID=E3EN30_BIFBS
71_007_scaffold_61_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14629..18375
DNA (3747bp) protein (1249aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
PurL Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:KFI43320.1}; EC=6.3.5.3 {ECO:0000313|EMBL:KFI43320.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Phosphoribosylformylglycinamidine synthase n=2 Tax=Bifidobacterium bifidum RepID=I3WJ12_BIFBI
71_007_scaffold_61_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18482..19144)
DNA (663bp) protein (221aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WJ13_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83545.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_007_scaffold_61_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19245..19883)
DNA (639bp) protein (213aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=I3WJ14_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53467.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_61_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20261..21082
DNA (822bp) protein (274aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4VAW3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50713.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
71_007_scaffold_61_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21190..21354
DNA (165bp) protein (55aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=E4VAW4_BIFBI
hypothetical protein
LysR family transcriptional regulator {ECO:0000313|EMBL:KFI43324.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_007_scaffold_61_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21658..22035)
DNA (378bp) protein (126aa)
Glyoxalase family protein n=3 Tax=Bifidobacterium bifidum RepID=E4NXW1_BIFBP
glyoxalase family protein
Glyoxalase family protein {ECO:0000313|EMBL:KFI43325.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_007_scaffold_61_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22128..22346)
DNA (219bp) protein (73aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WJ19_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE51473.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_007_scaffold_61_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22391..23980)
DNA (1590bp) protein (530aa)
ImpB/MucB/SamB family protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I963_BIFBI
ImpB/MucB/SamB family protein {ECO:0000313|EMBL:EKE51474.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA repair protein umuC; K03502 DNA polymerase V
71_007_scaffold_61_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24162..25670
DNA (1509bp) protein (503aa)
purF; amidophosphoribosyl transferase (EC:2.4.2.14)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidu
Amidophosphoribosyltransferase n=8 Tax=Bifidobacterium RepID=I3WJ21_BIFBI
71_007_scaffold_61_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25743..26780
DNA (1038bp) protein (346aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Phosphoribosylformylglycinamidine cyclo-ligase n=2 Tax=Bifidobacterium bifidum RepID=E3EN40_BIFBS
71_007_scaffold_61_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26813..28174
DNA (1362bp) protein (454aa)
purD; phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Phosphoribosylamine--glycine ligase n=5 Tax=Bifidobacterium RepID=E3EN41_BIFBS
71_007_scaffold_61_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28349..30487)
DNA (2139bp) protein (713aa)
Arylsulfatase n=3 Tax=Bifidobacterium bifidum RepID=U2DPN7_BIFBI
cgmA; putative cyclic beta-1,2-glucan modification protein
Phosphoglycerol transferase {ECO:0000313|EMBL:KFI43331.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_007_scaffold_61_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30884..32263
DNA (1380bp) protein (460aa)
Putative esterase n=2 Tax=Bifidobacterium bifidum RepID=E3EN43_BIFBS
putative esterase
Putative esterase {ECO:0000313|EMBL:ADO53477.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_61_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32260..34878
DNA (2619bp) protein (873aa)
Lysyl-tRNA synthetase n=2 Tax=Bifidobacterium RepID=I3WJ26_BIFBI
lysyl-tRNA synthetase
Lysyl-tRNA synthetase {ECO:0000313|EMBL:CDB22192.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_61_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35551..36456)
DNA (906bp) protein (302aa)
ABC transporter, substrate-binding protein n=2 Tax=Bifidobacterium RepID=E4VAX4_BIFBI
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EFR50724.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
metal ABC transporter substrate-binding protein; K02077 zinc/manganese transport system substrate-binding protein
71_007_scaffold_61_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36577..37344)
DNA (768bp) protein (256aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=K2M2T5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:CDB22195.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_007_scaffold_61_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


37394..37690
DNA (297bp) protein (99aa)
50S ribosomal protein L28 n=3 Tax=Bifidobacterium RepID=K2M062_BIFBI
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
rpmB2; 50S ribosomal protein L28
71_007_scaffold_61_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


37767..38072
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=7 Tax=Bifidobacterium RepID=E4NXX3_BIFBP
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_61_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


38119..38376
DNA (258bp) protein (86aa)
50S ribosomal protein L31 type B n=4 Tax=Bifidobacterium RepID=I3WJ31_BIFBI
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_61_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38569..38691
DNA (123bp) protein (41aa)
50S ribosomal protein L36 n=8 Tax=Bifidobacterium RepID=E3EP68_BIFBS
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Displaying items 1-30 of 55 in total

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