ggKbase home page

71_007_scaffold_98

Search features with annotation key words

Displaying items 1-30 of 126 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_007_scaffold_98_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

465..1166
DNA (702bp) protein (234aa)
lnbP2; lacto_N-biose phorylase; K15533 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase [EC:2.4.1.211]
Lacto_N-biose phorylase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ55_BIFBS
Lacto_N-biose phorylase {ECO:0000313|EMBL:ADO53205.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_98_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1395..2336
DNA (942bp) protein (314aa)
Sugar kinase, ROK family protein n=3 Tax=Bifidobacterium bifidum RepID=E3EQ54_BIFBS
sugar kinase, ROK family protein
Sugar kinase, ROK family protein {ECO:0000313|EMBL:EKF16603.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_007_scaffold_98_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2479..3633)
DNA (1155bp) protein (385aa)
Sugar kinase, ROK family {ECO:0000313|EMBL:KFI43090.1}; EC=2.7.1.2 {ECO:0000313|EMBL:KFI43090.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Sugar kinase, ROK family n=5 Tax=Bifidobacterium RepID=E4NX45_BIFBP
xylR; xylose repressor
71_007_scaffold_98_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3923..5011
DNA (1089bp) protein (363aa)
nahK; N-acetylhexosamine-1-kinase NahK; K13059 N-acetylhexosamine 1-kinase [EC:2.7.1.162]
Mucin desulfatase n=6 Tax=Bifidobacterium RepID=E3EQ52_BIFBS
N-acetylhexosamine-1-kinase NahK {ECO:0000313|EMBL:EKF16605.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_007_scaffold_98_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5011..6525
DNA (1515bp) protein (505aa)
galT2; galactose-1-phosphate uridylyltransferase GalT2 (EC:2.7.7.12); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Galactose-1-phosphate uridylyltransferase n=4 Tax=Bifidobacterium bifidum RepID=E4NX43_BIFBP
71_007_scaffold_98_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6571..7593
DNA (1023bp) protein (341aa)
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
GalE UDP-glucose 4-epimerase (Leloir pathway) n=3 Tax=Bifidobacterium RepID=E4NX42_BIFBP
GalE UDP-glucose 4-epimerase (Leloir pathway) {ECO:0000313|EMBL:CDB23233.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_98_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8005..9606)
DNA (1602bp) protein (534aa)
ATP-binding protein of ABC transporter system n=7 Tax=Bifidobacterium RepID=E3EQ49_BIFBS
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFL04567.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
ABC transporter ATP-binding protein
71_007_scaffold_98_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9838..10587
DNA (750bp) protein (250aa)
vanYG; M15B family D-Ala-D-Ala carboxypeptidase VanYG (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=3 Tax=Bifidobacterium bifidum RepID=E4V9Y0_BIFBI
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ERI82405.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98242.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_007_scaffold_98_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10616..12055)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Sensory transduction protein kinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GFP6_9BIFI
sensor signal transduction histidine kinase
71_007_scaffold_98_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12052..12717)
DNA (666bp) protein (222aa)
two-component response regulator (EC:2.7.13.3)
Two-component response regulator n=5 Tax=Bifidobacterium bifidum RepID=E4NX38_BIFBP
Two-component response regulator {ECO:0000313|EMBL:EKF15324.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_007_scaffold_98_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13157..13561
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ44_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53194.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_98_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13615..14256
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NX36_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI82412.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_007_scaffold_98_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14476..17493
DNA (3018bp) protein (1006aa)
UvrABC system protein A n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEG6_BIFBI
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
uvrA; excinuclease ABC subunit A
71_007_scaffold_98_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17490..19832
DNA (2343bp) protein (781aa)
UvrABC system protein C n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ41_BIFBS
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_98_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20026..20988
DNA (963bp) protein (321aa)
aroE; shikimate 5-dehydrogenase AroE (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25]
AroE Shikimate 5-dehydrogenase n=2 Tax=Bifidobacterium RepID=E4NX33_BIFBP
AroE Shikimate 5-dehydrogenase {ECO:0000313|EMBL:CDB23224.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_98_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20988..21932
DNA (945bp) protein (315aa)
UPF0042 nucleotide-binding protein BBIF_0984 n=2 Tax=Bifidobacterium bifidum RepID=E3EQ39_BIFBS
ATP-binding protein containing P-loop; K06958 UPF0042 nucleotide-binding protein
Nucleotide-binding protein BBIF_0984 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_98_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22099..23070
DNA (972bp) protein (324aa)
Putative sporulation transcription regulator WhiA n=7 Tax=Bifidobacterium RepID=E3EQ38_BIFBS
hypothetical protein; K09762 hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_007_scaffold_98_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23228..24433
DNA (1206bp) protein (402aa)
pgk; phosphoglycerate kinase; K00927 phosphoglycerate kinase [EC:2.7.2.3]
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Phosphoglycerate kinase n=3 Tax=Bifidobacterium bifidum RepID=E3EQ37_BIFBS
71_007_scaffold_98_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24502..25296
DNA (795bp) protein (265aa)
tpi; Triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Triosephosphate isomerase n=6 Tax=Bifidobacterium bifidum RepID=E3EQ36_BIFBS
71_007_scaffold_98_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25375..25623
DNA (249bp) protein (83aa)
Preprotein translocase, SecG subunit n=8 Tax=Bifidobacterium RepID=E3EQ35_BIFBS
secG; pre protein translocase, SecG subunit
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:ADO53185.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_98_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25731..26681
DNA (951bp) protein (317aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ldh3; L-lactate dehydrogenase; K00016 L-lactate dehydrogenase [EC:1.1.1.27]
L-lactate dehydrogenase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H8H9_BIFBI
71_007_scaffold_98_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26737..27573
DNA (837bp) protein (279aa)
putative hydrolase (EC:3.1.3.18)
Cof-like hydrolase n=5 Tax=Bifidobacterium RepID=E4V9W6_BIFBI
Putative hydrolase {ECO:0000313|EMBL:CDB21999.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_98_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27570..28940
DNA (1371bp) protein (457aa)
Na+ driven multidrug efflux pump n=2 Tax=Bifidobacterium RepID=K2I667_BIFBI
Na+ driven multidrug efflux pump {ECO:0000313|EMBL:CDB21998.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Na+ driven multidrug efflux pump
71_007_scaffold_98_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29334..29540
DNA (207bp) protein (69aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=K2HSB6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82426.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_007_scaffold_98_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29809..31221)
DNA (1413bp) protein (471aa)
Branched-chain amino acid transport system II carrier protein n=2 Tax=Bifidobacterium bifidum RepID=K2HUY4_BIFBI
Branched-chain amino acid transport protein {ECO:0000313|EMBL:BAQ98223.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
brnQ; branched-chain amino acid transport system IIcarrier protein
71_007_scaffold_98_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31431..32372)
DNA (942bp) protein (314aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=U2CEI1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ98222.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_007_scaffold_98_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32486..33589)
DNA (1104bp) protein (368aa)
tal; tal transaldolase (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2]
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Transaldolase n=8 Tax=Bifidobacterium bifidum RepID=E3EQ28_BIFBS
71_007_scaffold_98_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33722..35830)
DNA (2109bp) protein (703aa)
Transketolase {ECO:0000313|EMBL:EKF15293.1}; EC=2.2.1.1 {ECO:0000313|EMBL:EKF15293.1};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
tkt; transketolase; K00615 transketolase [EC:2.2.1.1]
Transketolase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MT56_BIFBI
71_007_scaffold_98_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36177..37433
DNA (1257bp) protein (419aa)
HrcA Heat-inducible transcription repressor n=2 Tax=Bifidobacterium bifidum RepID=E4NX20_BIFBP
hrcA; heat-inducible transcription repressor HrcA; K03705 heat-inducible transcriptional repressor
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_007_scaffold_98_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37486..38637
DNA (1152bp) protein (384aa)
Chaperone protein DnaJ n=9 Tax=Bifidobacterium RepID=E3EQ25_BIFBS
dnaJ2; chaperone protein dnaJ; K03686 molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Displaying items 1-30 of 126 in total

View Taxonomy