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71_007_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 52 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_007_scaffold_104_1
unknown

Not on your lists

3..77
DNA (75bp) protein (25aa)

This feature has no annotations

71_007_scaffold_104_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(408..1358)
DNA (951bp) protein (317aa)
cbh; Choloylglycine hydrolase; K01442 choloylglycine hydrolase [EC:3.5.1.24]
Choloylglycine hydrolase n=2 Tax=Bifidobacterium bifidum RepID=E3EM77_BIFBS
Choloylglycine hydrolase {ECO:0000313|EMBL:ADO53084.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_104_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1492..2127)
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM76_BIFBS
hypothetical protein; K07126
Uncharacterized protein {ECO:0000313|EMBL:ADO53083.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_104_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2225..3097)
DNA (873bp) protein (291aa)
Carbon-nitrogen hydrolase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LG91_BIFBI
Carbon-nitrogen hydrolase {ECO:0000313|EMBL:EKF16759.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
carbon-nitrogen hydrolase
71_007_scaffold_104_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3168..4034)
DNA (867bp) protein (289aa)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HAY3_9BIFI
ymeB; ABC transporter ATP-binding protein
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:CDB23377.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_104_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4186..5436)
DNA (1251bp) protein (417aa)
Glycosyltransferase n=3 Tax=Bifidobacterium RepID=K2HW53_BIFBI
Glycosyltransferase {ECO:0000313|EMBL:EKE50647.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
glgA; putative glycosyl transferase
71_007_scaffold_104_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5586..6059)
DNA (474bp) protein (158aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WHS8_BIFBI
hypothetical protein
Membrane spanning protein {ECO:0000313|EMBL:KFI42907.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_007_scaffold_104_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6405..7937)
DNA (1533bp) protein (511aa)
gltD; glutamate synthase small chain GltD (EC:1.4.1.14); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase subunit beta {ECO:0000313|EMBL:EKE50649.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EKE50649.1};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
GltD Glutamate synthase [NADPH] small chain n=6 Tax=Bifidobacterium RepID=E4P1F5_BIFBP
71_007_scaffold_104_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7939..12420)
DNA (4482bp) protein (1494aa)
gltB; ferredoxin-dependent glutamate synthase (EC:1.4.7.1)
Glutamate synthase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IPK6_BIFBI
Glutamate synthase {ECO:0000313|EMBL:EKE50650.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_007_scaffold_104_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12790..14880)
DNA (2091bp) protein (697aa)
Translation elongation factor n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1F3_BIFBP
translation elongation factor
Translation elongation factor {ECO:0000313|EMBL:CDB23341.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_104_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15077..16645)
DNA (1569bp) protein (523aa)
aminotransferase (EC:2.6.1.1); K14260 alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
Aminotransferase n=2 Tax=Bifidobacterium bifidum RepID=E4P1F2_BIFBP
Aminotransferase {ECO:0000313|EMBL:CDB23338.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_104_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17161..18555)
DNA (1395bp) protein (465aa)
hemN; oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM66_BIFBS
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ADO53073.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_104_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18570..20450)
DNA (1881bp) protein (627aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
lepA; GTP-binding protein LepA (EC:2.7.7.4); K03596 GTP-binding protein LepA
Elongation factor 4 n=6 Tax=Bifidobacterium RepID=E4V9D9_BIFBI
71_007_scaffold_104_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


20659..20919
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=7 Tax=Bifidobacterium RepID=E3EM64_BIFBS
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_007_scaffold_104_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21057..21815)
DNA (759bp) protein (253aa)
Conserved hypothetical membrane protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHR9_BIFBI
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:AFL04432.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_007_scaffold_104_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21907..22569)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Bifidobacterium bifidum RepID=UPI00019770BA
Uncharacterized protein {ECO:0000313|EMBL:EFR50228.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
71_007_scaffold_104_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22592..22864)
DNA (273bp) protein (91aa)
Putative phosphoesterase or phosphohydrolase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HAS3_9BIFI
Putative phosphoesterase or phosphohydrolase {ECO:0000313|EMBL:CDB23322.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
putative phosphoesterase or phosphohydrolase
71_007_scaffold_104_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23067..24194)
DNA (1128bp) protein (376aa)
ilvE; branched-chain amino acid aminotransferase IlvE (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Branched-chain amino acid aminotransferase n=3 Tax=Bifidobacterium RepID=K2H9P8_BIFBI
IlvE Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:CDB23319.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_104_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(24410..25036)
DNA (627bp) protein (209aa)
50S ribosomal protein L25 n=3 Tax=Bifidobacterium bifidum RepID=E4P1E4_BIFBP
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_007_scaffold_104_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25351..26343
DNA (993bp) protein (331aa)
Hydrolase of the alpha/beta superfamily protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPX5_9BIFI
Hydrolase of the alpha/beta superfamily protein {ECO:0000313|EMBL:CDB23316.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein; K06889
71_007_scaffold_104_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26482..27927)
DNA (1446bp) protein (482aa)
pntB; NAD(P) transhydrogenase subunit beta (EC:1.6.1.2); K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
NAD(P) transhydrogenase subunit beta n=6 Tax=Bifidobacterium RepID=E4P1E2_BIFBP
71_007_scaffold_104_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27927..28241)
DNA (315bp) protein (105aa)
pntA2; NAD(P) transhydrogenase subunit alpha; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase alpha2 subunit n=7 Tax=Bifidobacterium RepID=E3EM57_BIFBS
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:EKF15071.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_007_scaffold_104_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28245..29384)
DNA (1140bp) protein (380aa)
pntA1; NAD(P) transhydrogenase subunit alpha (EC:1.6.1.2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase subunit alpha subunit n=8 Tax=Bifidobacterium RepID=E3EM56_BIFBS
PntA1 NAD(P) transhydrogenase subunit alpha part 1 {ECO:0000313|EMBL:CDB23312.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_104_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29604..31640
DNA (2037bp) protein (679aa)
fadD3; long-chain-fatty-acid--CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Long-chain-fatty-acid--CoA ligase n=2 Tax=Bifidobacterium RepID=R6GPX1_9BIFI
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CDB23311.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_104_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31741..32751)
DNA (1011bp) protein (337aa)
GTPase Era n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1D8_BIFBP
era; GTP-binding protein; K03595 GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_007_scaffold_104_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32800..34218)
DNA (1419bp) protein (473aa)
Conserved hypothetical membrane spanning protein with CBS and transporter associated domains n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM53_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein with CBS and transporter associated domains {ECO:0000313|EMBL:ADO53060.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_007_scaffold_104_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34295..34840)
DNA (546bp) protein (182aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Endoribonuclease YbeY n=8 Tax=Bifidobacterium RepID=E3EM52_BIFBS
putative metalloprotease
71_007_scaffold_104_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34837..35922)
DNA (1086bp) protein (362aa)
PhoH PhoH protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1D5_BIFBP
phoH; PhoH protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
Phosphate starvation-induced protein {ECO:0000313|EMBL:AFL04419.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_007_scaffold_104_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35931..36269)
DNA (339bp) protein (113aa)
HIT family protein n=6 Tax=Bifidobacterium RepID=E4P1D4_BIFBP
putative HIT family hydrolase
Histidine triad domain protein {ECO:0000313|EMBL:ERI82339.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98033.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_007_scaffold_104_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36343..37140)
DNA (798bp) protein (266aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVW0_BIFBI
putative Ser-Asp rich fibrinogen/bonesialo protein binding protein
Displaying items 1-30 of 52 in total

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