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71_008_scaffold_484

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_484_1
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(2..310)
DNA (309bp) protein (103aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Putative iron(III) dicitrate ABC transporter ATP-binding protein FecE n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6J8P3_9FIRM
Putative iron(III) dicitrate ABC transporter ATP-binding protein FecE {ECO:0000313|EMBL:CDB46647.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
71_008_scaffold_484_2
Veillonella sp. 6_1_27, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(310..1350)
DNA (1041bp) protein (347aa)
Hemin ABC transporter, permease protein n=1 Tax=Veillonella sp. 6_1_27 RepID=D6KS02_9FIRM
Hemin ABC transporter, permease protein {ECO:0000313|EMBL:EFG24598.2}; TaxID=450749 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 6_1_27.;"
transporter permease; K02015 iron complex transport system permease protein
71_008_scaffold_484_3
unknown

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comp(1497..2174)
DNA (678bp) protein (226aa)

This feature has no annotations

71_008_scaffold_484_4
unknown

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comp(2244..2489)
DNA (246bp) protein (82aa)

This feature has no annotations

71_008_scaffold_484_5
Dialister sp. CAG:357, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(2877..3200)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Dialister sp. CAG:357 RepID=R7CRG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80048.1}; TaxID=1262869 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister; environmental samples.;" source="Dialister sp. CAG:357.;"
hypothetical protein
71_008_scaffold_484_6
Anaerostipes sp. 3_2_56FAA, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3193..4059)
DNA (867bp) protein (289aa)
ImpB/mucB/samB family protein n=2 Tax=Anaerostipes RepID=E5VTW6_9FIRM
ImpB/mucB/samB family protein {ECO:0000313|EMBL:EFV22748.1}; TaxID=665937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes sp. 3_2_56FAA.;"
UMUC domain-containing protein DNA-repair protein; K03502 DNA polymerase V
71_008_scaffold_484_7
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4059..4442)
DNA (384bp) protein (128aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K03502 DNA polymerase V
DNA-directed DNA polymerase {ECO:0000313|EMBL:AEB06812.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AEB06812.1};; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
DNA-directed DNA polymerase n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2N7J6_CORGP
71_008_scaffold_484_8
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(4598..9544)
DNA (4947bp) protein (1649aa)
Helicase C-terminal domain protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LE95_9FIRM
Helicase C-terminal domain protein {ECO:0000313|EMBL:EFY04839.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
helicase
71_008_scaffold_484_9
Veillonella sp. 3_1_44, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(9563..10360)
DNA (798bp) protein (266aa)
Toxin-antitoxin system, antitoxin component, Xre family n=1 Tax=Veillonella sp. 3_1_44 RepID=D6KLP2_9FIRM
Toxin-antitoxin system, antitoxin component, Xre family {ECO:0000313|EMBL:EFG22835.2}; TaxID=457416 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 3_1_44.;"
XRE family transcriptional regulator
71_008_scaffold_484_10
unknown

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10889..11200
DNA (312bp) protein (104aa)

This feature has no annotations

71_008_scaffold_484_11
Veillonella parvula, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11172..12398
DNA (1227bp) protein (409aa)
Type IV secretory pathway VirD4 protein-like protein n=1 Tax=Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) RepID=D1BL71_VEIPT
type IV secretory pathway VirD4 protein-like protein
Type IV secretory pathway VirD4 protein-like protein {ECO:0000313|EMBL:ACZ24128.1}; TaxID=479436 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3); (Veillonella alcalescens).;"
71_008_scaffold_484_12
Veillonella montpellierensis, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12455..13051
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Veillonella sp. 3_1_44 RepID=D6KLN9_9FIRM
Type IV secretory protein VirD4 {ECO:0000313|EMBL:KGF47056.1}; TaxID=1401067 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella montpellierensis DNF00314.;"
type IV secretory pathway VirD4 protein-like protein
71_008_scaffold_484_13
Veillonella sp. 3_1_44, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13048..15717
DNA (2670bp) protein (890aa)
Putative conjugative relaxase domain protein n=1 Tax=Veillonella sp. 3_1_44 RepID=D6KLN8_9FIRM
Putative conjugative relaxase domain protein {ECO:0000313|EMBL:EFG22831.2}; TaxID=457416 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 3_1_44.;"
TrwC relaxase
71_008_scaffold_484_14
unknown

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15701..15979
DNA (279bp) protein (93aa)

This feature has no annotations

71_008_scaffold_484_15
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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16029..17141
DNA (1113bp) protein (371aa)
Site-specific recombinase n=2 Tax=Megasphaera RepID=S7HNT7_9FIRM
Site-specific recombinase {ECO:0000313|EMBL:EPP18689.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
site-specific recombinase
71_008_scaffold_484_trna_2
unknown

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comp(17240..17313)
DNA (74bp)
transferRNA Arg
71_008_scaffold_484_trna_1
unknown

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comp(17320..17392)
DNA (73bp)
transferRNA Trp
71_008_scaffold_484_16
Dialister succinatiphilus, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

17684..19198
DNA (1515bp) protein (505aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1D086_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=742743 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister.;" source="Dialister succinatiphilus YIT 11850.;"
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein
71_008_scaffold_484_17
Dialister invisus CAG:218, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

19436..20545
DNA (1110bp) protein (370aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1263072 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister; environmental samples.;" source="Dialister invisus CAG:218.;"
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=Dialister invisus CAG:218 RepID=R5T9T6_9FIRM
71_008_scaffold_484_18
Dialister sp. CAG:357, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

20547..20765
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Dialister sp. CAG:357 RepID=R7CU82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD81147.1}; TaxID=1262869 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister; environmental samples.;" source="Dialister sp. CAG:357.;"
hypothetical protein
71_008_scaffold_484_19
Dialister invisus CAG:218, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

20762..21817
DNA (1056bp) protein (352aa)
DNA replication and repair protein RecF n=1 Tax=Dialister invisus CAG:218 RepID=R5SJ72_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1263072 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister; environmental samples.;" source="Dialister invisus CAG:218.;"
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF
71_008_scaffold_484_20
unknown

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comp(22541..22891)
DNA (351bp) protein (117aa)

This feature has no annotations

Displaying 22 items

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