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71_008_scaffold_116

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Displaying items 1-30 of 72 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_116_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..1795)
DNA (1794bp) protein (598aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595, ECO:0000256|SAAS:SAAS00274805}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595, ECO:0000256|SAAS:SAAS00274803};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
pnp; polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polynucleotide phosphorylase/polyadenylase (Fragment) n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LE27_BIFBI
71_008_scaffold_116_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(1970..2239)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B558D4
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
71_008_scaffold_116_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2417..3157)
DNA (741bp) protein (247aa)
The export of O-antigen and teichoic acid related membrane protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HWE9_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30520.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
the export of O-antigen and teichoic acid related membrane protein
71_008_scaffold_116_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3541..4437
DNA (897bp) protein (299aa)
Ribonucleoside-diphosphate reductase {ECO:0000313|EMBL:KFI95775.1}; EC=1.17.4.1 {ECO:0000313|EMBL:KFI95775.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
nrdF2; ribonucleoside-diphosphate reductase subunit beta (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Streptomyces sp. LaPpAH-108 RepID=UPI0003727E38
71_008_scaffold_116_trna_3
unknown

Not on your lists

comp(4701..4771)
DNA (71bp)
transferRNA Gly
71_008_scaffold_116_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4910..6724)
DNA (1815bp) protein (605aa)
hypothetical protein; K05341 amylosucrase [EC:2.4.1.4]
Sucrose phosphorylase n=3 Tax=Bifidobacterium RepID=S3EJA4_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30462.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_008_scaffold_116_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6872..7360)
DNA (489bp) protein (163aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=A1A3G4_BIFAA
Putative transposase {ECO:0000313|EMBL:KFI90306.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_008_scaffold_116_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7875..8333)
DNA (459bp) protein (153aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RTF2_9BIFI
4'-phosphopantetheinyl transferase
71_008_scaffold_116_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8948..18454)
DNA (9507bp) protein (3169aa)
Type I multifunctional fatty acid synthase {ECO:0000313|EMBL:KFI90308.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KFI90308.1};; EC=2.3.1.41 {ECO:0000313|EMBL:KFI90308.1};; EC=2.3.1.86 {ECO:0000313|EMBL:KFI90308.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
fas; Type I multifunctional fatty acid synthase; K11533 fatty acid synthase, bacteria type [EC:2.3.1.-]
Type I multifunctional fatty acid synthase n=3 Tax=Bifidobacterium bifidum RepID=E3EN51_BIFBS
71_008_scaffold_116_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18507..20141)
DNA (1635bp) protein (545aa)
AccD Acetyl-/propionyl-CoA carboxylase beta chain n=4 Tax=Bifidobacterium RepID=E4NZL1_BIFBP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30458.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
accD; acetyl-/propionyl-CoA carboxylase beta chain
71_008_scaffold_116_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20138..22171)
DNA (2034bp) protein (678aa)
Carboxylate-amine ligase {ECO:0000313|EMBL:KFI90310.1}; EC=6.3.4.14 {ECO:0000313|EMBL:KFI90310.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
JadJ; K11263 acetyl-/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.3.4.14]
Carbamoyl-phosphate synthase L chain, ATP binding domain protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A3U3_BIFAD
71_008_scaffold_116_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22362..23045
DNA (684bp) protein (228aa)
BioY family protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BQG5_BIFBR
BioY protein {ECO:0000313|EMBL:KFI90311.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
bioY; bioy; K03523 putative biotin biosynthesis protein BioY
71_008_scaffold_116_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23224..24114)
DNA (891bp) protein (297aa)
biotin-(acetyl-CoA carboxylase) ligase (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin-(Acetyl-CoA carboxylase) ligase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZL4_BIFBP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30455.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_008_scaffold_116_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24170..26302
DNA (2133bp) protein (711aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQR5_9BIFI
Membrane protein {ECO:0000313|EMBL:KFI90313.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_008_scaffold_116_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26309..27109
DNA (801bp) protein (267aa)
Transcriptional regulator n=9 Tax=Bifidobacterium RepID=E4NZL6_BIFBP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30453.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_008_scaffold_116_15
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27240..28682)
DNA (1443bp) protein (481aa)
PTS system Galactitol-specific IIC component n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0R6_9CLOT
PTS system Galactitol-specific IIC component {ECO:0000313|EMBL:KFI88729.1}; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
galacitol PTS, EIIC; K02775 PTS system, galactitol-specific IIC component
71_008_scaffold_116_16
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28746..29861)
DNA (1116bp) protein (372aa)
Alcohol dehydrogenase, iron-dependent {ECO:0000313|EMBL:KFI88728.1}; EC=1.1.1.61 {ECO:0000313|EMBL:KFI88728.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
4-hydroxybutyrate dehydrogenase n=1 Tax=Bifidobacterium minimum RepID=UPI0003B319B7
NAD-dependent 4-hydroxybutyrate dehydrogenase
71_008_scaffold_116_17
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29908..30873)
DNA (966bp) protein (322aa)
Transketolase domain-containing protein {ECO:0000313|EMBL:KFI88727.1}; EC=2.2.1.1 {ECO:0000313|EMBL:KFI88727.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
Transketolase, C-terminal domain protein n=2 Tax=Clostridium RepID=E9SNB3_CLOSY
transketolase, alpha subunit
71_008_scaffold_116_18
Bifidobacterium saeculare, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30919..31710)
DNA (792bp) protein (264aa)
Transketolase domain-containing protein {ECO:0000313|EMBL:KFI88726.1}; EC=2.2.1.1 {ECO:0000313|EMBL:KFI88726.1};; TaxID=1437611 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saeculare DSM 6531 = LMG 14934.;"
Transketolase domain protein; K00615 transketolase [EC:2.2.1.1]
Transketolase domain-containing protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GIY9_CLOSY
71_008_scaffold_116_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32136..32888)
DNA (753bp) protein (251aa)
Transcriptional regulator n=5 Tax=root RepID=E8MW01_BIFL1
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAJ71945.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
71_008_scaffold_116_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32888..33856)
DNA (969bp) protein (323aa)
IclR helix-turn-helix domain protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5ED26_BIFLI
IclR helix-turn-helix domain protein {ECO:0000313|EMBL:EEQ55920.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
transcriptional regulator
71_008_scaffold_116_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(34158..34850)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=3 Tax=Bifidobacterium RepID=RL1_BIFAA
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
71_008_scaffold_116_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(34865..35296)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RGU4_9BIFI
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
rplK; 50S ribosomal protein L11
71_008_scaffold_116_23
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35563..36444)
DNA (882bp) protein (294aa)
Transcription termination/antitermination protein NusG n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RHZ1_9BIFI
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcription antiterminator
71_008_scaffold_116_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36475..36702)
DNA (228bp) protein (76aa)
Protein translocase subunit SecE n=6 Tax=Bifidobacterium RepID=E3ENJ2_BIFBS
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
71_008_scaffold_116_trna_2
unknown

Not on your lists

comp(36744..36816)
DNA (73bp)
transferRNA Trp
71_008_scaffold_116_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37045..38250)
DNA (1206bp) protein (402aa)
aspC; aspartate transaminase (EC:2.6.1.1)
Aminotransferase, class I/II n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FDL4_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30448.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_008_scaffold_116_26
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38381..39511)
DNA (1131bp) protein (377aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
proB; glutamate 5-kinase ProB (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11]
Glutamate 5-kinase n=5 Tax=Bifidobacterium RepID=E3ENJ0_BIFBS
71_008_scaffold_116_27
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39655..41325)
DNA (1671bp) protein (557aa)
GTPase Obg n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P833_9BIFI
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
GTP-binding protein, GTP1/OBG family; K03979 GTP-binding protein
71_008_scaffold_116_28
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(41444..41692)
DNA (249bp) protein (83aa)
50S ribosomal protein L27 n=8 Tax=Bifidobacterium RepID=E3ELT4_BIFBS
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
rpmA; 50S ribosomal protein L27
Displaying items 1-30 of 72 in total

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