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71_008_scaffold_197

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_197_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(378..2012)
DNA (1635bp) protein (545aa)
Gamma-glutamyltransferase {ECO:0000313|EMBL:KFI93667.1}; EC=2.3.2.2 {ECO:0000313|EMBL:KFI93667.1};; EC=3.4.19.13 {ECO:0000313|EMBL:KFI93667.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
gamma-glutamyltranspeptidase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
hypothetical protein n=1 Tax=Clostridiaceae bacterium JC13 RepID=UPI0002F41259
71_008_scaffold_197_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2101..3402)
DNA (1302bp) protein (434aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q702_BIFDB
71_008_scaffold_197_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3834..5855
DNA (2022bp) protein (674aa)
peptidase S1 and S6, chymotrypsin/Hap; K08372 putative serine protease PepD [EC:3.4.21.-]
Trypsin n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BLN3_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30202.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_008_scaffold_197_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6244..8601
DNA (2358bp) protein (786aa)
E1-E2 ATPase {ECO:0000313|EMBL:KFI93664.1}; EC=3.6.3.- {ECO:0000313|EMBL:KFI93664.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
zntA2; znta2; K01552 [EC:3.6.3.-]
ZntA2 n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R174_BIFLM
71_008_scaffold_197_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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8840..10291
DNA (1452bp) protein (484aa)
gltD2; gltd2; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
GltD2 n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R165_BIFLM
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30204.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_008_scaffold_197_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10593..11732
DNA (1140bp) protein (380aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S8A7_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30205.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_008_scaffold_197_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11809..12756
DNA (948bp) protein (316aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
protease; K03799 heat shock protein HtpX [EC:3.4.24.-]
Protease HtpX homolog n=5 Tax=Bifidobacterium RepID=D6DAS2_BIFLN
71_008_scaffold_197_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12753..13670
DNA (918bp) protein (306aa)
transcriptional regulator n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A75F
Transcriptional regulator {ECO:0000313|EMBL:KFI93660.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
RpiR family transcriptional regulator
71_008_scaffold_197_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13882..14922
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000347AF3F
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30209.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter substrate-binding protein; K02012 iron(III) transport system substrate-binding protein
71_008_scaffold_197_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14912..16558
DNA (1647bp) protein (549aa)
Ferric iron ABC transporter, permease protein n=1 Tax=Leifsonia rubra CMS 76R RepID=S7XLF1_9MICO
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30210.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter permease; K02011 iron(III) transport system permease protein
71_008_scaffold_197_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16561..17727
DNA (1167bp) protein (389aa)
ABC transporter ATP-binding protein; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
Putative ABC transporter ATP-binding protein n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1AR81_RHOOB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30211.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_008_scaffold_197_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17789..19462
DNA (1674bp) protein (558aa)
Phosphoesterase {ECO:0000313|EMBL:KFI93656.1}; EC=3.1.4.17 {ECO:0000313|EMBL:KFI93656.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein n=1 Tax=Pseudoclavibacter faecalis RepID=UPI000377119B
hypothetical protein
71_008_scaffold_197_trna_1
unknown

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19599..19669
DNA (71bp)
transferRNA Gly
71_008_scaffold_197_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19905..20543)
DNA (639bp) protein (213aa)
Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:KFI93655.1}; EC=3.2.2.28 {ECO:0000313|EMBL:KFI93655.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
uracil-DNA glycosylase superfamily; K03649 TDG/mug DNA glycosylase family protein [EC:3.2.2.-]
Uracil-DNA glycosylase superfamily n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZXD5_BIFLJ
71_008_scaffold_197_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20714..21919)
DNA (1206bp) protein (402aa)
Oligosaccharide deacetylase {ECO:0000313|EMBL:KFI93654.1}; EC=3.2.1.8 {ECO:0000313|EMBL:KFI93654.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
oligosaccharide deacetylase (EC:3.2.1.8)
Polysaccharide deacetylase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0S1_BIFBI
71_008_scaffold_197_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22406..23494
DNA (1089bp) protein (363aa)
Fructose-bisphosphate aldolase, class II {ECO:0000313|EMBL:KFI93653.1}; EC=4.1.2.13 {ECO:0000313|EMBL:KFI93653.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
fructose-bisphosphate aldolase, class II; K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
Fructose-bisphosphate aldolase, class II n=3 Tax=Bifidobacterium longum RepID=D6ZXD6_BIFLJ
71_008_scaffold_197_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23600..24886
DNA (1287bp) protein (429aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
purA; Adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y013_BIFBU
71_008_scaffold_197_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24971..25987
DNA (1017bp) protein (339aa)
Putative fluoride ion transporter CrcB n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GEJ8_9BIFI
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
crcB; Integral membrane protein for chromosomecondensation
71_008_scaffold_197_18
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25984..26358
DNA (375bp) protein (125aa)
Putative fluoride ion transporter CrcB n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMB6_9BIFI
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
crcB2; camphor resistance protein CrcB; K06199 CrcB protein
71_008_scaffold_197_19
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26555..27703
DNA (1149bp) protein (383aa)
ScrR Transcriptional regulator, LacI family n=3 Tax=Bifidobacterium bifidum RepID=E4NYH9_BIFBP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30220.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
scrR; LacI family transcriptional regulator; K03484 LacI family transcriptional regulator, sucrose operon repressor
71_008_scaffold_197_20
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28381..29901
DNA (1521bp) protein (507aa)
Sucrose phosphorylase {ECO:0000313|EMBL:KFI93648.1}; EC=2.4.1.7 {ECO:0000313|EMBL:KFI93648.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
spl; sucrose phosphorylase; K00690 sucrose phosphorylase [EC:2.4.1.7]
Sucrose phosphorylase n=2 Tax=Bifidobacterium longum RepID=V6XTV6_BIFLN
71_008_scaffold_197_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30082..31836
DNA (1755bp) protein (585aa)
MFS transporter n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976620
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30222.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
major facilitator superfamily (MFS1) protein
71_008_scaffold_197_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32346..33710
DNA (1365bp) protein (455aa)
Transporter, major facilitator family protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B3N7_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30223.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transporter
71_008_scaffold_197_23
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33937..34458
DNA (522bp) protein (174aa)
ketol-acid reductoisomerase; K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Ketol-acid reductoisomerase n=3 Tax=Bifidobacterium longum RepID=B7GT37_BIFLS
Displaying 24 items

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