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71_008_scaffold_200

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_200_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..285)
DNA (285bp) protein (95aa)
30S ribosomal protein S1 {ECO:0000313|EMBL:KFI95095.1}; EC=1.17.1.2 {ECO:0000313|EMBL:KFI95095.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
rpsA; 30S ribosomal protein S1 (EC:1.17.1.2); K02945 small subunit ribosomal protein S1
30S ribosomal protein S1 n=4 Tax=Bifidobacterium dentium RepID=D2Q9R8_BIFDB
71_008_scaffold_200_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(542..1420)
DNA (879bp) protein (293aa)
tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
Bifunctional protein FolD n=3 Tax=Bifidobacterium breve RepID=F9XYI7_BIFBU
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_008_scaffold_200_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1542..2744
DNA (1203bp) protein (401aa)
Zinc-binding lipo protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GL10_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31486.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
adcA; zinc-binding lipo protein
71_008_scaffold_200_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3117..4043
DNA (927bp) protein (309aa)
Zinc/manganese transport system, ATP-binding protein n=3 Tax=Bifidobacterium RepID=E3EQT3_BIFBS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31487.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
zinc/manganese ABC transporter ATP-binding protein; K02074 zinc/manganese transport system ATP-binding protein
71_008_scaffold_200_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4040..4885
DNA (846bp) protein (282aa)
ABC-type Mn2+/Zn2+ transport systems permease component n=14 Tax=Bifidobacterium RepID=B3DSS6_BIFLD
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31488.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter permease; K02075 zinc/manganese transport system permease protein
71_008_scaffold_200_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5075..5590)
DNA (516bp) protein (172aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=3 Tax=Bifidobacterium RepID=A1A167_BIFAA
71_008_scaffold_200_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5587..6183)
DNA (597bp) protein (199aa)
CarD-like protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTZ6_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31490.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator
71_008_scaffold_200_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6323..8578
DNA (2256bp) protein (752aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
1,4-alpha-glucan branching enzyme (EC:2.4.1.18); K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
1,4-alpha-glucan branching enzyme GlgB n=2 Tax=Bifidobacterium dentium RepID=D2Q9R1_BIFDB
71_008_scaffold_200_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8592..9311
DNA (720bp) protein (240aa)
Response regulator receiver domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q786_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31492.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
two-component response regulator
71_008_scaffold_200_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9316..10398
DNA (1083bp) protein (361aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
sensory transduction protein kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V924_BIFBI
71_008_scaffold_200_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10486..11163)
DNA (678bp) protein (226aa)
Putative phosphoribosyltransferase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GA54_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31494.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
phosphoribosyltransferase
71_008_scaffold_200_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11166..11945)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Bifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8) RepID=I1WAB2_BIFAR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31495.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein; K07024
71_008_scaffold_200_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12081..12509
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZTH0_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31496.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_008_scaffold_200_14
unknown

Not on your lists

comp(12742..12966)
DNA (225bp) protein (75aa)

This feature has no annotations

71_008_scaffold_200_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13133..13306
DNA (174bp) protein (58aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=C5ECP7_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:KFI95109.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_008_scaffold_200_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13383..13844
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVT2_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31497.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_008_scaffold_200_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14005..15024)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Gardnerella vaginalis RepID=UPI0003015FA2
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31498.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_008_scaffold_200_18
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15432..16967)
DNA (1536bp) protein (512aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=S2ZJT1_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31499.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Conserved hypothetical secreted protein
71_008_scaffold_200_19
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16964..20197)
DNA (3234bp) protein (1078aa)
Putative glycosyltransferase n=2 Tax=Bifidobacterium longum RepID=B3DST7_BIFLD
Glycosyltransferase {ECO:0000313|EMBL:KFI95113.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
putative glycosyltransferase
71_008_scaffold_200_20
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20194..20502)
DNA (309bp) protein (103aa)
Transcriptional regulator WhiB n=9 Tax=Bifidobacterium RepID=E3EQS0_BIFBS
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
whiB; transcription factor WhiB
71_008_scaffold_200_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20790..22274
DNA (1485bp) protein (495aa)
Cell envelope-related transcriptional attenuator n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GTD7_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31502.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
cell envelope-related transcriptional attenuator
71_008_scaffold_200_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22439..24391
DNA (1953bp) protein (651aa)
DNA segregation ATPase and related proteins n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P144_BIFBP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31503.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
DNA segregation ATPase and-like proteins; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
71_008_scaffold_200_23
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24477..24755
DNA (279bp) protein (93aa)
Transcriptional regulator WhiB n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4IMF2_BIFAP
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
WhiB-type transcription regulator
71_008_scaffold_200_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24937..26424)
DNA (1488bp) protein (496aa)
Histidine kinase n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XWD5_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31505.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
two-component sensor kinase
71_008_scaffold_200_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26606..27496
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XU13_9BIFI
Hemolysin III {ECO:0000313|EMBL:KFI95119.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein; K11068 hemolysin III
71_008_scaffold_200_26
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27686..28168)
DNA (483bp) protein (161aa)
transcription elongation factor GreA n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B58577
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain protein; K03624 transcription elongation factor GreA
71_008_scaffold_200_27
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28315..28719)
DNA (405bp) protein (135aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
fkbP; Peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FFT1_9BIFI
71_008_scaffold_200_28
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28844..29410)
DNA (567bp) protein (189aa)
4-hydroxybenzoate polyprenyl transferase and related prenyl transferase n=5 Tax=Bifidobacterium bifidum RepID=I3WHE0_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31509.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
4-hydroxybenzoate polyprenyl transferase and related prenyl transferase
71_008_scaffold_200_29
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29575..30033)
DNA (459bp) protein (153aa)
Uncharacterized protein {ECO:0000313|EMBL:KFI95123.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
71_008_scaffold_200_trna_1
unknown

Not on your lists

comp(30541..30619)
DNA (79bp)
transferRNA Leu
Displaying items 1-30 of 34 in total

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