ggKbase home page

71_008_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 118 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_34_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..315)
DNA (315bp) protein (105aa)
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Glucose-6-phosphate isomerase (Fragment) n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HUR7_BIFBI
71_008_scaffold_34_trna_1
unknown

Not on your lists

562..634
DNA (73bp)
transferRNA Thr
71_008_scaffold_34_trna_2
unknown

Not on your lists

695..775
DNA (81bp)
transferRNA Leu
71_008_scaffold_34_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

819..1820
DNA (1002bp) protein (334aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=I3WGB5_BIFBI
hypothetical protein
Membrane spanning protein with auxin efflux carrier domain {ECO:0000313|EMBL:KFI42439.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_008_scaffold_34_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1942..2610)
DNA (669bp) protein (223aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Non-canonical purine NTP pyrophosphatase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IR25_BIFBI
nucleoside-triphosphatase
71_008_scaffold_34_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2690..3454)
DNA (765bp) protein (255aa)
prh; ribonuclease PH Rph (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56]
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Ribonuclease PH n=8 Tax=Bifidobacterium RepID=E4NZH1_BIFBP
71_008_scaffold_34_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3624..4946
DNA (1323bp) protein (441aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Nicotinate phosphoribosyltransferase n=3 Tax=Bifidobacterium bifidum RepID=I3WGB2_BIFBI
nicotinic acid phosphoribosyl transferase
71_008_scaffold_34_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4969..5211
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WGB1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52563.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_34_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5313..5630
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M088_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15421.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_008_scaffold_34_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6002..6556)
DNA (555bp) protein (185aa)
ilvN; acetolactate synthase small subunit IlvN (EC:2.2.1.6); K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
Acetolactate synthase 3 regulatory subunit {ECO:0000313|EMBL:EKF15422.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EKF15422.1};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Acetolactate synthase small subunit n=9 Tax=Bifidobacterium RepID=E3EPM5_BIFBS
71_008_scaffold_34_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6592..8484)
DNA (1893bp) protein (631aa)
ilvB; acetolactate synthase large subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase large subunit n=2 Tax=Bifidobacterium RepID=R6H8G9_9BIFI
Acetolactate synthase large subunit {ECO:0000313|EMBL:CDB22507.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_008_scaffold_34_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8670..9437)
DNA (768bp) protein (256aa)
rncS; ribonuclease III; K03685 ribonuclease III [EC:3.1.26.3]
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Ribonuclease 3 n=5 Tax=Bifidobacterium bifidum RepID=E3EPM3_BIFBS
71_008_scaffold_34_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9587..9781)
DNA (195bp) protein (65aa)
50S ribosomal protein L32 n=8 Tax=Bifidobacterium RepID=E3EPM2_BIFBS
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_008_scaffold_34_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9910..10524)
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EPM1_BIFBS
hypothetical protein; K07040 uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52558.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_34_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10589..11494)
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EPM0_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52557.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_34_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11578..12072)
DNA (495bp) protein (165aa)
coaD; phosphopantetheine adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Phosphopantetheine adenylyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E3EPL9_BIFBS
71_008_scaffold_34_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12242..12583
DNA (342bp) protein (114aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WGA3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE51277.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_008_scaffold_34_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12604..14724)
DNA (2121bp) protein (707aa)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENR2_BIFBS
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:ADO52554.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
ABC transporter ATP-binding protein
71_008_scaffold_34_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14833..15558)
DNA (726bp) protein (242aa)
GuaA GMP synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:KFI42425.1}; EC=6.3.5.2 {ECO:0000313|EMBL:KFI42425.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Amidotransferase n=7 Tax=Bifidobacterium RepID=E3ENR1_BIFBS
amidotransferase
71_008_scaffold_34_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15705..17327
DNA (1623bp) protein (541aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
cysS; cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=3 Tax=Bifidobacterium RepID=E3ENR0_BIFBS
71_008_scaffold_34_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17547..18455)
DNA (909bp) protein (303aa)
Cation efflux protein n=4 Tax=Bifidobacterium bifidum RepID=I3WG99_BIFBI
cation efflux protein
Membrane spanning protein {ECO:0000313|EMBL:KFI42423.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_008_scaffold_34_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


18816..20462
DNA (1647bp) protein (549aa)
Signal recognition particle protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DL43_BIFBI
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ffh; Signal recognition particle, subunit FFH/SRP54; K03106 signal recognition particle subunit SRP54
71_008_scaffold_34_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20638..21810
DNA (1173bp) protein (391aa)
Endonuclease/exonuclease/phosphatase n=3 Tax=Bifidobacterium bifidum RepID=I3WG97_BIFBI
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:AFL03910.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_008_scaffold_34_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22080..22772)
DNA (693bp) protein (231aa)
Arginine exporter n=3 Tax=Bifidobacterium bifidum RepID=I3WG96_BIFBI
argO; arginine exporter
Lysine exporter protein {ECO:0000313|EMBL:KFI42420.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_008_scaffold_34_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22975..24504
DNA (1530bp) protein (510aa)
multiple substrate aminotransferase (EC:2.6.1.39)
Transcriptional regulator, GntR family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BVM6_BIFBI
Putative transcriptional regulator {ECO:0000313|EMBL:BAQ97532.1}; Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERI82234.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_008_scaffold_34_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25081..25524
DNA (444bp) protein (148aa)
30S ribosomal protein S16 n=5 Tax=Bifidobacterium RepID=E3ENQ4_BIFBS
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_008_scaffold_34_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25527..25760
DNA (234bp) protein (78aa)
UPF0109 protein BBIF_0340 n=8 Tax=Bifidobacterium RepID=E3ENQ3_BIFBS
hypothetical protein
UPF0109 protein B216_01729 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_008_scaffold_34_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25757..26371
DNA (615bp) protein (205aa)
Ribosome maturation factor RimM n=3 Tax=Bifidobacterium RepID=E3ENQ2_BIFBS
rimM; 16S rRNA processing protein rimM; K02860 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_34_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26633..27631
DNA (999bp) protein (333aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
tRNA (guanine-N1)-methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V7U5_BIFBI
71_008_scaffold_34_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27878..28330
DNA (453bp) protein (151aa)
Hsp20-family heat shock chaperone n=3 Tax=Bifidobacterium bifidum RepID=E3ENQ0_BIFBS
Hsp20-family heat shock chaperone
Hsp20-family heat shock chaperone {ECO:0000313|EMBL:ADO52542.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 118 in total

View Taxonomy