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71_008_scaffold_269

Search features with annotation key words

Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_269_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..285)
DNA (285bp) protein (95aa)
30S ribosomal protein S1 n=2 Tax=Bifidobacterium longum RepID=D6ZTI2_BIFLJ
rpsA; RNA-binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1
30S ribosomal protein S1 {ECO:0000313|EMBL:ERI84399.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_008_scaffold_269_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(433..1308)
DNA (876bp) protein (292aa)
folD; 5, 10-methylene-tetrahydrofolatedehydrogenase/Methenyl tetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIN6_BIFBI
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_008_scaffold_269_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1371..2465
DNA (1095bp) protein (365aa)
ABC transporter, substrate-binding protein n=2 Tax=Bifidobacterium bifidum RepID=E4V931_BIFBI
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EFR50123.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
adcA; zinc-binding lipo protein
71_008_scaffold_269_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2633..3523
DNA (891bp) protein (297aa)
Zinc/manganese transport system, ATP-binding protein n=3 Tax=Bifidobacterium RepID=E3EQT3_BIFBS
zinc/manganese ABC transporter ATP-binding protein; K02074 zinc/manganese transport system ATP-binding protein
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAQ97943.1}; ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI84402.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_008_scaffold_269_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3520..4356
DNA (837bp) protein (279aa)
Zinc/manganese transport system, permease protein n=8 Tax=Bifidobacterium RepID=E3EQT2_BIFBS
zinc/manganese ABC transporter permease; K02075 zinc/manganese transport system permease protein
High-affinity zinc uptake system membrane protein {ECO:0000313|EMBL:AFL04328.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_008_scaffold_269_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4450..4932)
DNA (483bp) protein (161aa)
ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphatesynthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacteri
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H7S9_9BIFI
71_008_scaffold_269_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4945..5541)
DNA (597bp) protein (199aa)
Transcriptional regulator, CarD family n=8 Tax=Bifidobacterium RepID=E3EQT0_BIFBS
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:EKE49923.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_008_scaffold_269_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5600..7924
DNA (2325bp) protein (775aa)
glgB; 1,4-alpha-glucan branching protein (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum
1,4-alpha-glucan branching enzyme GlgB n=6 Tax=Bifidobacterium RepID=E4P155_BIFBP
71_008_scaffold_269_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7938..8657
DNA (720bp) protein (240aa)
two-component response regulator (EC:4.6.1.1)
Two-component response regulator {ECO:0000313|EMBL:KFI42799.1}; EC=4.6.1.1 {ECO:0000313|EMBL:KFI42799.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Two-component response regulator n=8 Tax=Bifidobacterium RepID=E3EQS8_BIFBS
71_008_scaffold_269_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8657..9763
DNA (1107bp) protein (369aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CK19_BIFBI
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:ERI84408.1}; Two-component sensor kinase {ECO:0000313|EMBL:BAQ97937.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Sensory transduction protein kinase
71_008_scaffold_269_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9832..10227
DNA (396bp) protein (132aa)
peptidase S24-like domain; K03503 DNA polymerase V [EC:3.4.21.-]
UmuD protein n=2 Tax=Bifidobacterium bifidum RepID=K2HTS3_BIFBI
UmuD protein {ECO:0000313|EMBL:EKE49927.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_008_scaffold_269_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10334..11050)
DNA (717bp) protein (239aa)
Amidophosphoribosyl transferase-like protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHF8_BIFBI
amidophosphoribosyl transferase-like protein
Amidophosphoribosyl transferase-like protein {ECO:0000313|EMBL:AFL04321.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_008_scaffold_269_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11054..11881)
DNA (828bp) protein (276aa)
Phosphomannomutase n=2 Tax=Bifidobacterium RepID=E3EQS4_BIFBS
phosphomannomutase; K07024
Phosphomannomutase {ECO:0000313|EMBL:CDB22319.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
71_008_scaffold_269_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12014..12388
DNA (375bp) protein (125aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WHF6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42794.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_008_scaffold_269_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12461..13972)
DNA (1512bp) protein (504aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2MV70_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI84413.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
71_008_scaffold_269_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13969..17118)
DNA (3150bp) protein (1050aa)
Regulatory protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H7U1_9BIFI
Regulatory protein {ECO:0000313|EMBL:CDB22322.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_008_scaffold_269_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17152..17451)
DNA (300bp) protein (100aa)
Transcriptional regulator WhiB n=9 Tax=Bifidobacterium RepID=E3EQS0_BIFBS
whiB; transcription factor WhiB
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_008_scaffold_269_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17733..19208
DNA (1476bp) protein (492aa)
Membrane-bound protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHF2_BIFBI
lytR; membrane-bound protein
Putative transcriptional regulator {ECO:0000313|EMBL:ADO52961.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_269_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19469..21286
DNA (1818bp) protein (606aa)
Cell division protein, FtsK/SpoIIIE n=5 Tax=Bifidobacterium bifidum RepID=I3WHF1_BIFBI
cell division protein, FtsK/SpoIIIE
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:ERI84417.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97928.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_008_scaffold_269_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21402..21680
DNA (279bp) protein (93aa)
Transcriptional regulator WhiB n=7 Tax=Bifidobacterium bifidum RepID=E3EQR7_BIFBS
cell division transcription factor WhmD
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_008_scaffold_269_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21815..23350)
DNA (1536bp) protein (512aa)
sensory histidine kinase n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976AE9
Sensory transduction protein kinase {ECO:0000313|EMBL:CDB22327.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Sensory transduction protein kinase
71_008_scaffold_269_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23439..24326
DNA (888bp) protein (296aa)
Conserved hypothetical membrane protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GA66_9BIFI
Conserved hypothetical membrane protein {ECO:0000313|EMBL:CDB22328.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
Displaying 22 items

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