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71_008_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 247 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_0_1
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..536)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8P4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG71428.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
71_008_scaffold_0_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(573..3479)
DNA (2907bp) protein (969aa)
bgl5; beta-glucosidase (EC:3.2.1.52); K05349 beta-glucosidase [EC:3.2.1.21]
Bgl5 Beta-glucosidase n=2 Tax=Bifidobacterium dentium RepID=D2Q807_BIFDB
Glycoside hydrolase, family 3, N-terminal domain protein {ECO:0000313|EMBL:ETO95014.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_0_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3766..5763
DNA (1998bp) protein (666aa)
serine/threonine protein kinase (EC:2.7.11.17)
Kinase domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9K3_9BIFI
Kinase domain protein {ECO:0000313|EMBL:ETO95009.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_0_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5901..6881
DNA (981bp) protein (327aa)
protein-disulfide isomerase (EC:2.7.11.1)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9K2_9BIFI
Thioredoxin {ECO:0000313|EMBL:ETO94966.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_0_trna_1
unknown

Not on your lists

6998..7071
DNA (74bp)
transferRNA Thr
71_008_scaffold_0_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7345..8793
DNA (1449bp) protein (483aa)
G5 domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9K1_9BIFI
G5 domain protein {ECO:0000313|EMBL:EFM40924.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
71_008_scaffold_0_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


8793..9743
DNA (951bp) protein (317aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1150423 species="Bacteria; Actinobacteri
ksgA; dimethyladenosine transferase (EC:2.1.1.48); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Bifidobacterium dentium RepID=E0Q9K0_9BIFI
71_008_scaffold_0_7
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9740..10639
DNA (900bp) protein (300aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
spE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=2 Tax=Bifidobacterium dentium RepID=E0Q9J9_9BIFI
71_008_scaffold_0_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10684..11322
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9J8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO94979.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_0_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11385..12755)
DNA (1371bp) protein (457aa)
CCA tRNA nucleotidyltransferase {ECO:0000313|EMBL:ETO95011.1}; EC=2.7.7.72 {ECO:0000313|EMBL:ETO95011.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
pcnA; PcnA tRNA nucleotidyltransferase (EC:2.7.7.25); K00970 poly(A) polymerase [EC:2.7.7.19]
tRNA adenylyltransferase n=2 Tax=Bifidobacterium dentium RepID=E1NAZ7_9BIFI
71_008_scaffold_0_10
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13085..13747
DNA (663bp) protein (221aa)
phosphohydrolase (EC:3.6.1.13)
Phosphohydrolase (MutT/nudix family protein) n=4 Tax=Bifidobacterium dentium RepID=D2Q815_BIFDB
Hydrolase, NUDIX family {ECO:0000313|EMBL:EFM40919.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
71_008_scaffold_0_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13747..15852
DNA (2106bp) protein (702aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8N3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO95012.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_0_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15849..19565
DNA (3717bp) protein (1239aa)
Integral membrane protein MviN n=2 Tax=Bifidobacterium dentium RepID=E0Q9J4_9BIFI
Putative murein biosynthesis integral membrane protein MurJ {ECO:0000313|EMBL:ETO94969.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
mviN; integral membrane protein MviN; K03980 virulence factor
71_008_scaffold_0_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19711..21444
DNA (1734bp) protein (578aa)
ilvB; acetolactate synthase large subunit (EC:1.2.3.3); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9J3_9BIFI
Acetolactate synthase {ECO:0000313|EMBL:ETO95010.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_0_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21625..22557
DNA (933bp) protein (311aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
trxB2; trxB2 Thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=2 Tax=Bifidobacterium dentium RepID=E0Q9J2_9BIFI
71_008_scaffold_0_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22752..24059)
DNA (1308bp) protein (436aa)
ParB-like protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9J1_9BIFI
ParB/RepB/Spo0J family partition protein {ECO:0000313|EMBL:ETO94958.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family
71_008_scaffold_0_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24062..25042)
DNA (981bp) protein (327aa)
parA; chromosome partitioning protein PrA (EC:1.18.6.1); K03496 chromosome partitioning protein
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9J0_9BIFI
YhjQ protein {ECO:0000313|EMBL:ETO94980.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_0_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25275..26024)
DNA (750bp) protein (250aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
gidB; methyltransferase gidB (Glucose inhibited division protein B); K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G n=2 Tax=Bifidobacterium dentium RepID=E0Q9I9_9BIFI
71_008_scaffold_0_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26222..26767)
DNA (546bp) protein (182aa)
R3H domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9I8_9BIFI
R3H domain protein {ECO:0000313|EMBL:ETO94985.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
jag; Jag protein; K06346 spoIIIJ-associated protein
71_008_scaffold_0_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26887..27897)
DNA (1011bp) protein (337aa)
Membrane protein insertase, YidC/Oxa1 family n=2 Tax=Bifidobacterium dentium RepID=E0Q9I7_9BIFI
60Kd inner membrane protein {ECO:0000313|EMBL:ETO94981.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
yidC; YidC Inner membrane protein (Preprotein translocase subunit YidC); K03217 preprotein translocase subunit YidC
71_008_scaffold_0_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29051..30553
DNA (1503bp) protein (501aa)
Chromosomal replication initiator protein DnaA n=3 Tax=Bifidobacterium dentium RepID=B1S8M2_9BIFI
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
dnaA; chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein
71_008_scaffold_0_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31028..32152
DNA (1125bp) protein (375aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
DNA polymerase III, subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=2 Tax=Bifidobacterium dentium RepID=E0Q9I3_9BIFI
71_008_scaffold_0_22
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32237..33427
DNA (1191bp) protein (397aa)
DNA replication and repair protein RecF n=2 Tax=Bifidobacterium dentium RepID=D2Q6I0_BIFDB
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
recF; Recombinational DNA repair ATPase RecF; K03629 DNA replication and repair protein RecF
71_008_scaffold_0_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33427..33912
DNA (486bp) protein (162aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S8L9_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFM40904.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
71_008_scaffold_0_24
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34126..36240
DNA (2115bp) protein (705aa)
DNA gyrase subunit B {ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|RuleBase:RU003363};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
gyrB; DNA gyrase (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=2 Tax=Bifidobacterium dentium RepID=D2Q6I2_BIFDB
71_008_scaffold_0_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


36266..38935
DNA (2670bp) protein (890aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=4 Tax=Bifidobacterium dentium RepID=D2Q6I3_BIFDB
71_008_scaffold_0_26
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38998..39549
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S8L6_9BIFI
hypothetical protein
Transmembrane PF12089 domain protein {ECO:0000313|EMBL:ETO94990.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_0_27
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39865..41211)
DNA (1347bp) protein (449aa)
glutamate dehydrogenase (EC:1.4.1.2); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
Glutamate dehydrogenase n=2 Tax=Bifidobacterium dentium RepID=E0Q9H7_9BIFI
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_0_28
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41463..42491
DNA (1029bp) protein (343aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium dentium RepID=E0Q9H6_9BIFI
Small molecule-binding regulator domain protein {ECO:0000313|EMBL:ETO94983.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
LacI family transcriptional regulator; K02525 LacI family transcriptional regulator, kdg operon repressor
71_008_scaffold_0_29
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

42681..44006
DNA (1326bp) protein (442aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S8L2_9BIFI
Putative membrane protein {ECO:0000313|EMBL:ETO94989.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
Displaying items 1-30 of 247 in total

View Taxonomy