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71_008_scaffold_79

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Displaying items 1-30 of 54 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_79_trna_1
unknown

Not on your lists

comp(1..63)
DNA (63bp)
transferRNA Arg
71_008_scaffold_79_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(156..1472)
DNA (1317bp) protein (439aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=2 Tax=Bifidobacterium dentium RepID=E0Q7T0_9BIFI
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
clpX; ATP-dependent Clp protease ATP-binding subunit clpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
71_008_scaffold_79_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1577..2278)
DNA (702bp) protein (234aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
clp2; ATP-dependent Clp protease proteolytic subunit 2 (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Bifidobacterium dentium RepID=D2Q9H3_BIFDB
71_008_scaffold_79_3
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2281..2901)
DNA (621bp) protein (207aa)
clp1; ATP-dependent Clp protease proteolytic subunit 2; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
ATP-dependent Clp protease proteolytic subunit n=5 Tax=Bifidobacterium RepID=A1A0Y5_BIFAA
71_008_scaffold_79_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3008..4666)
DNA (1659bp) protein (553aa)
ABC transporter, substrate-binding protein, family 5 n=2 Tax=Bifidobacterium dentium RepID=E0Q7T3_9BIFI
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:ETO97868.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
peptides ABC transporter substrate-binding protein
71_008_scaffold_79_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4768..6285)
DNA (1518bp) protein (506aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S636_9BIFI
Transporter, major facilitator family protein {ECO:0000313|EMBL:ETO97740.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
transporter
71_008_scaffold_79_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6412..7788)
DNA (1377bp) protein (459aa)
ATPase, AAA family {ECO:0000313|EMBL:EFM41800.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EFM41800.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
ATPase AAA (EC:3.4.21.53); K07478 putative ATPase
ATPase, AAA family n=2 Tax=Bifidobacterium dentium RepID=E0Q7T5_9BIFI
71_008_scaffold_79_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7873..10431
DNA (2559bp) protein (853aa)
DEAD/DEAH box helicase n=2 Tax=Bifidobacterium dentium RepID=E0Q7T6_9BIFI
DEAD/DEAH box helicase {ECO:0000313|EMBL:EFM41801.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
DEAD/DEAH box-like helicase
71_008_scaffold_79_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10443..11438)
DNA (996bp) protein (332aa)
Polyphosphate:nucleotide phosphotransferase, PPK2 family {ECO:0000313|EMBL:ETO97737.1}; EC=2.7.4.- {ECO:0000313|EMBL:ETO97737.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Polyphosphate:nucleotide phosphotransferase, PPK2 family n=2 Tax=Bifidobacterium dentium RepID=E0Q7T7_9BIFI
hypothetical protein
71_008_scaffold_79_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11531..12664)
DNA (1134bp) protein (378aa)
Glutamate transport system permease protein GluD n=2 Tax=Bifidobacterium dentium RepID=D2Q9G6_BIFDB
ABC transporter, permease protein {ECO:0000313|EMBL:ETO97877.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
gluD; glutamate transporter permease gluD; K10007 glutamate transport system permease protein
71_008_scaffold_79_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12671..13348)
DNA (678bp) protein (226aa)
Permease protein of ABC transporter for glutamate n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A0X9_BIFAA
ABC transporter, permease protein {ECO:0000313|EMBL:ETO97788.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
gluC; glutamate ABC transporter permease; K10006 glutamate transport system permease protein
71_008_scaffold_79_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13352..14194)
DNA (843bp) protein (281aa)
Glutamate-binding protein of ABC transporter system n=3 Tax=Bifidobacterium RepID=A1A0X8_BIFAA
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:ETO97873.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
gluB; glutamateABC transporter substrate-binding protein; K10005 glutamate transport system substrate-binding protein
71_008_scaffold_79_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14227..15015)
DNA (789bp) protein (263aa)
glutamate transport ATP-binding protein gluA (EC:3.6.3.31); K10008 glutamate transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter, ATP-binding protein n=3 Tax=Bifidobacterium dentium RepID=E0Q7U1_9BIFI
Glutamate ABC transporter, ATP-binding protein GluA {ECO:0000313|EMBL:ETO97822.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_79_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15345..16139)
DNA (795bp) protein (265aa)
glutamate transport ATP-binding protein gluA (EC:3.6.3.31); K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
Glutamate transport ATP-binding protein gluA n=2 Tax=Bifidobacterium dentium RepID=D2Q9G1_BIFDB
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ETO97896.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_79_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16136..17680)
DNA (1545bp) protein (515aa)
ABC transporter permease (EC:4.2.1.91); K02029 polar amino acid transport system permease protein; K02030 polar amino acid transport system substrate-binding protein
Permease protein of ABC transporter system n=4 Tax=Bifidobacterium dentium RepID=D2Q9G0_BIFDB
ABC transporter, permease protein {ECO:0000313|EMBL:ETO97780.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_79_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(17836..19635)
DNA (1800bp) protein (600aa)
Aspartate--tRNA ligase {ECO:0000313|EMBL:ETO97846.1}; EC=6.1.1.- {ECO:0000313|EMBL:ETO97846.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
Aspartate--tRNA ligase n=3 Tax=Bifidobacterium dentium RepID=B1S647_9BIFI
71_008_scaffold_79_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(19698..21089)
DNA (1392bp) protein (464aa)
Histidine--tRNA ligase {ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|SAAS:SAAS00043629};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Histidine--tRNA ligase n=1 Tax=Bifidobacterium dentium JCVIHMP022 RepID=E1NAV0_9BIFI
71_008_scaffold_79_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21207..22643
DNA (1437bp) protein (479aa)
ATPase involved in DNA repair n=2 Tax=Bifidobacterium dentium RepID=D2Q9F7_BIFDB
PF03993 domain protein {ECO:0000313|EMBL:ETO97832.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
DNA repair ATPase
71_008_scaffold_79_18
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23096..24091
DNA (996bp) protein (332aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7U9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM41814.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
71_008_scaffold_79_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24266..26848)
DNA (2583bp) protein (861aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S653_9BIFI
Clp amino terminal domain protein {ECO:0000313|EMBL:ETO97801.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
clpC; Negative regulator of genetic competence clpC/mecB; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC
71_008_scaffold_79_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26988..28007
DNA (1020bp) protein (340aa)
UspA domain protein n=3 Tax=Bifidobacterium dentium RepID=D2Q9F4_BIFDB
uspA; UspA domain protein
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26740.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
71_008_scaffold_79_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28146..29312)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7V3_9BIFI
PF11228 family protein {ECO:0000313|EMBL:ETO97760.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_79_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29316..29705)
DNA (390bp) protein (130aa)
Cold-shock DNA-binding domain protein n=3 Tax=Bifidobacterium RepID=B6XX10_9BIFI
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EFM41819.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
cspB; cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
71_008_scaffold_79_23
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29870..31717)
DNA (1848bp) protein (616aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
two component system histidine kinase (EC:2.7.13.3); K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S657_9BIFI
71_008_scaffold_79_24
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31731..32462)
DNA (732bp) protein (244aa)
two-component response regulator (EC:3.1.1.61); K02483 two-component system, OmpR family, response regulator
Two-component response regulator n=4 Tax=Bifidobacterium dentium RepID=D2Q9F0_BIFDB
Response regulator receiver domain protein {ECO:0000313|EMBL:EFM41821.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
71_008_scaffold_79_25
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32467..33366)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q7V7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO97772.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_79_26
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33449..33739
DNA (291bp) protein (97aa)
WXG100 family type VII secretion target n=4 Tax=Bifidobacterium dentium RepID=B1S660_9BIFI
ESAT-6-like protein {ECO:0000256|RuleBase:RU362001}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
71_008_scaffold_79_27
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33879..35495)
DNA (1617bp) protein (539aa)
60 kDa chaperonin n=6 Tax=Bifidobacterium RepID=D2Q9E7_BIFDB
groEL; molecular chaperone GroEL; K04077 chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
71_008_scaffold_79_28
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35778..36416)
DNA (639bp) protein (213aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S663_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO97866.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_79_29
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36536..37267
DNA (732bp) protein (244aa)
ung; uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Uracil-DNA glycosylase n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q9E5_BIFDB
Displaying items 1-30 of 54 in total

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