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71_008_scaffold_230

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_230_trna_1
unknown

Not on your lists

34..107
DNA (74bp)
transferRNA Met
71_008_scaffold_230_1
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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159..329
DNA (171bp) protein (57aa)
50S ribosomal protein L33 n=10 Tax=Bifidobacterium RepID=RL33_BIFAA
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
71_008_scaffold_230_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

390..1589
DNA (1200bp) protein (400aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158]
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S6J0_9BIFI
71_008_scaffold_230_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1673..3172
DNA (1500bp) protein (500aa)
Amino acid permease n=2 Tax=Bifidobacterium dentium RepID=D2Q8F0_BIFDB
amino acid permease; K03294 basic amino acid/polyamine antiporter, APA family
Amino acid permease {ECO:0000313|EMBL:ADB09086.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
71_008_scaffold_230_4
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3205..3525
DNA (321bp) protein (107aa)
fdxC; fdxC Ferredoxin (EC:1.18.1.2)
FdxC Ferredoxin n=4 Tax=Bifidobacterium dentium RepID=D2Q8F1_BIFDB
FdxC Ferredoxin {ECO:0000313|EMBL:ETY70826.1}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
71_008_scaffold_230_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3633..4781
DNA (1149bp) protein (383aa)
Succinyldiaminopimelate transaminase {ECO:0000313|EMBL:ETO98255.1}; EC=2.6.1.17 {ECO:0000313|EMBL:ETO98255.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
aminotransferase (EC:2.6.1.5)
Aminotransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q8F2_BIFDB
71_008_scaffold_230_6
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4778..6070)
DNA (1293bp) protein (431aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
DNA-damage-inducible protein P (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=2 Tax=Bifidobacterium dentium RepID=E0Q8R1_9BIFI
71_008_scaffold_230_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6206..7123
DNA (918bp) protein (306aa)
Transporter n=2 Tax=Bifidobacterium dentium RepID=D2Q8F4_BIFDB
transporter; K11939 inner membrane transporter RhtA
Transporter {ECO:0000313|EMBL:ADB09090.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
71_008_scaffold_230_trna_2
unknown

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7305..7392
DNA (88bp)
transferRNA Ser
71_008_scaffold_230_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7597..8964
DNA (1368bp) protein (456aa)
Bacterial capsule synthesis protein n=2 Tax=Bifidobacterium dentium RepID=E0Q8Q9_9BIFI
Capsule synthesis protein {ECO:0000313|EMBL:ETO98023.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein; K07282 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein)
71_008_scaffold_230_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9043..10032
DNA (990bp) protein (330aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:ETO98296.1}; EC=1.1.1.290 {ECO:0000313|EMBL:ETO98296.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
SerA2 D-3-phosphoglycerate dehydrogenase n=2 Tax=Bifidobacterium dentium RepID=D2Q8F6_BIFDB
serA2; D-3-phosphoglycerate dehydrogenase
71_008_scaffold_230_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10067..10705
DNA (639bp) protein (213aa)
YigZ family protein n=2 Tax=Bifidobacterium dentium RepID=B1S6I2_9BIFI
YigZ family protein {ECO:0000313|EMBL:ETO98248.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_230_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10740..11411
DNA (672bp) protein (224aa)
Leucine rich repeat variant n=4 Tax=Bifidobacterium dentium RepID=B1S6I1_9BIFI
Leucine rich repeat variant {ECO:0000313|EMBL:ETO98183.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_230_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11489..13651
DNA (2163bp) protein (721aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
malQ2; 4-alpha-glucanotransferase (EC:2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25]
4-alpha-glucanotransferase n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S6I0_9BIFI
71_008_scaffold_230_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


13920..14369
DNA (450bp) protein (150aa)
50S ribosomal protein L13 n=4 Tax=Bifidobacterium dentium RepID=D2Q8G0_BIFDB
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_230_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14390..14881
DNA (492bp) protein (164aa)
30S ribosomal protein S9 n=4 Tax=Bifidobacterium dentium RepID=D2Q8G1_BIFDB
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
71_008_scaffold_230_15
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14952..17402)
DNA (2451bp) protein (817aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
glgX2; glycogen operon protein glgX (EC:2.4.1.18); K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Glycogen debranching enzyme GlgX n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q8Q2_9BIFI
71_008_scaffold_230_16
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17669..18673
DNA (1005bp) protein (335aa)
dehydrogenase (EC:1.1.1.9)
Putative chlorophyll synthesis pathway protein BchC {ECO:0000313|EMBL:EFM41193.1}; EC=1.1.1.103 {ECO:0000313|EMBL:EFM41193.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Putative dehydrogenase n=4 Tax=Bifidobacterium dentium RepID=D2Q8G3_BIFDB
71_008_scaffold_230_17
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18777..20195
DNA (1419bp) protein (473aa)
Transporter, major facilitator family protein n=2 Tax=Bifidobacterium dentium RepID=E0Q8Q0_9BIFI
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFM41192.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
71_008_scaffold_230_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20204..21364)
DNA (1161bp) protein (387aa)
ROK family transcriptional regulator (EC:5.1.3.14)
ROK family protein n=2 Tax=Bifidobacterium dentium RepID=E0Q8P9_9BIFI
ROK family protein {ECO:0000313|EMBL:ETO98044.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_230_19
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21746..24478
DNA (2733bp) protein (911aa)
adh2; aldehyde-alcohol dehydrogenase 2 (EC:1.2.1.10); K04072 acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
Adh2 Aldehyde-alcohol dehydrogenase 2 n=4 Tax=Bifidobacterium dentium RepID=D2Q8G7_BIFDB
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
71_008_scaffold_230_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24798..25517
DNA (720bp) protein (240aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S6H0_9BIFI
hypothetical protein
Narrowly conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADB09104.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
71_008_scaffold_230_21
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25779..26087
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=41 Tax=Bacteria RepID=D2Q8G9_BIFDB
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
71_008_scaffold_230_22
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


26105..26746
DNA (642bp) protein (214aa)
50S ribosomal protein L3 n=4 Tax=Bifidobacterium dentium RepID=D2Q8H0_BIFDB
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
71_008_scaffold_230_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


26753..27418
DNA (666bp) protein (222aa)
50S ribosomal protein L4 n=4 Tax=Bifidobacterium dentium RepID=D2Q8H1_BIFDB
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
71_008_scaffold_230_24
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


27424..27720
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=10 Tax=Bacteria RepID=A1A071_BIFAA
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
71_008_scaffold_230_25
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


27757..28587
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=4 Tax=Bifidobacterium dentium RepID=D2Q8H3_BIFDB
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_230_26
Bifidobacterium asteroides, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


28603..28680
DNA (78bp) protein (26aa)
30S ribosomal protein S19 n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B50F38
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1684 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium asteroides.;"
Displaying 28 items

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