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71_008_scaffold_278

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_278_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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180..1565
DNA (1386bp) protein (462aa)
RNA polymerase sigma factor SigA n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8I0_9BIFI
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hrdB; RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor
71_008_scaffold_278_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1665..4001
DNA (2337bp) protein (779aa)
gyrB2; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
GyrB2 DNA gyrase subunit B n=2 Tax=Bifidobacterium dentium RepID=D2QB32_BIFDB
DNA gyrase, B subunit, C-terminal domain protein {ECO:0000313|EMBL:ETO96298.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_278_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4163..5395
DNA (1233bp) protein (411aa)
Multidrug resistance protein n=2 Tax=Bifidobacterium dentium RepID=D2QB31_BIFDB
Transporter, major facilitator domain protein {ECO:0000313|EMBL:ETO96119.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
multidrug resistance protein
71_008_scaffold_278_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5380..6786)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8I3_9BIFI
PF13777 domain protein {ECO:0000313|EMBL:ETO96120.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_278_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6943..7476
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8I4_9BIFI
PF11188 family protein {ECO:0000313|EMBL:ETO96352.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_278_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7478..7693
DNA (216bp) protein (72aa)
DNA-binding helix-turn-helix protein n=2 Tax=Bifidobacterium dentium RepID=E0Q5Q4_9BIFI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFM41978.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
transcriptional regulator; K07727 putative transcriptional regulator
71_008_scaffold_278_7
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7699..12474
DNA (4776bp) protein (1592aa)
lhr; ATP-dependent helicase lhr; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
ATP-dependent helicase lhr n=2 Tax=Bifidobacterium dentium RepID=D2QB27_BIFDB
DEAD/DEAH box helicase {ECO:0000313|EMBL:ETO96108.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_278_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12478..15171)
DNA (2694bp) protein (898aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
gyrA2; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
GyrA2 DNA gyrase subunit A n=2 Tax=Bifidobacterium dentium RepID=D2QB26_BIFDB
71_008_scaffold_278_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15398..16588
DNA (1191bp) protein (397aa)
Nucleotide pyrophosphatase n=2 Tax=Bifidobacterium dentium RepID=D2QB25_BIFDB
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:ETO96182.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
nucleotide pyrophosphatase
71_008_scaffold_278_10
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16604..17623)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q5Q9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM41983.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
DNA binding protein
71_008_scaffold_278_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17775..18068
DNA (294bp) protein (98aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S8J1_9BIFI
hypothetical protein
PF13834 domain protein {ECO:0000313|EMBL:ETO96328.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_278_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18068..18544
DNA (477bp) protein (159aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Bifidobacterium dentium RepID=E0Q5R1_9BIFI
71_008_scaffold_278_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18650..20974
DNA (2325bp) protein (775aa)
GTP diphosphokinase {ECO:0000313|EMBL:ETO96207.1}; EC=2.7.6.5 {ECO:0000313|EMBL:ETO96207.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
relA1; GTP pyrophosphokinase/Guanosine 3',5'-bis(Diphosphate)3'-pyrophosphohydrolase (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5]
RelA1 GTP pyrophosphokinase/Guanosine 3',5'-bis(Diphosphate)3'-pyrophosphohydrolase n=2 Tax=Bifidobacterium dentium RepID=D2QB21_BIFDB
71_008_scaffold_278_14
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21136..22194)
DNA (1059bp) protein (353aa)
Bifidobacterium kashiwanohense JCM 15439 = DSM 21854 DNA, complete genome {ECO:0000313|EMBL:BAQ29444.1}; Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:KFI67214.1}; EC=5.2.1.8 {ECO:0000313|EMBL:KFI67214.1};; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8); K03767 peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type n=2 Tax=Bifidobacterium RepID=C0BRZ8_9BIFI
71_008_scaffold_278_15
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22324..22548
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BRZ6_9BIFI
XRE family transcriptional regulator {ECO:0000313|EMBL:KIM01262.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
Xre-type transcriptional regulator
71_008_scaffold_278_16
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22599..23408
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BRZ4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG70944.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
71_008_scaffold_278_17
unknown

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comp(23411..23491)
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 17 items

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