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71_008_scaffold_312

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_312_trna_1
unknown

Not on your lists

3..76
DNA (74bp)
transferRNA Arg
71_008_scaffold_312_trna_2
unknown

Not on your lists

121..194
DNA (74bp)
transferRNA Arg
71_008_scaffold_312_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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339..1718
DNA (1380bp) protein (460aa)
Na(+)/H(+) antiporter NhaA n=3 Tax=Bifidobacterium dentium RepID=B1S631_9BIFI
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
nhaA; Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
71_008_scaffold_312_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1753..2424)
DNA (672bp) protein (224aa)
O-methyltransferase n=3 Tax=Bifidobacterium dentium RepID=B1S630_9BIFI
O-methyltransferase {ECO:0000313|EMBL:ETO97835.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
safC; Caffeoyl-CoA O-methyltransferase
71_008_scaffold_312_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2430..3356)
DNA (927bp) protein (309aa)
sdhB; succinate dehydrogenase iron-sulfur protein (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S629_9BIFI
Putative succinate dehydrogenase iron-sulfur subunit {ECO:0000313|EMBL:ETO97800.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_312_4
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3416..5275)
DNA (1860bp) protein (620aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.4.3.16); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
SdhA Succinate dehydrogenase flavoprotein subunit n=2 Tax=Bifidobacterium dentium RepID=D2Q9H8_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26763.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
71_008_scaffold_312_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5335..6684)
DNA (1350bp) protein (450aa)
Smf protein n=4 Tax=Bifidobacterium dentium RepID=D2Q9H9_BIFDB
Putative DNA protecting protein DprA {ECO:0000313|EMBL:ETO97903.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
smf; Smf protein; K04096 DNA processing protein
71_008_scaffold_312_6
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6681..8207)
DNA (1527bp) protein (509aa)
ATPase-like magnesium chelatase subunit ChlI (EC:6.6.1.1); K07391 magnesium chelatase family protein
Mg chelatase-like protein n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q7S4_9BIFI
Mg chelatase-like protein {ECO:0000313|EMBL:ETO97851.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_312_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8207..8659)
DNA (453bp) protein (151aa)
UPF0102 protein BDP_0807 n=4 Tax=Bifidobacterium dentium RepID=D2Q9I1_BIFDB
endonuclease; K07460 putative endonuclease
UPF0102 protein BDP_0807 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
71_008_scaffold_312_8
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8821..9696)
DNA (876bp) protein (292aa)
pyridoxine kinase (EC:2.7.1.35); K00868 pyridoxine kinase [EC:2.7.1.35]
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Pyridoxine kinase n=3 Tax=Bifidobacterium dentium RepID=D2Q9I2_BIFDB
71_008_scaffold_312_9
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10026..11336
DNA (1311bp) protein (437aa)
metY; O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.48); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
MetY O-acetylhomoserine aminocarboxypropyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q9I4_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26769.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
71_008_scaffold_312_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11618..12157
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S620_9BIFI
ECF-type riboflavin transporter, S component {ECO:0000313|EMBL:ETO97791.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_008_scaffold_312_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12271..13869
DNA (1599bp) protein (533aa)
Cobalt ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFM41783.1}; EC=3.6.3.- {ECO:0000313|EMBL:EFM41783.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
cobalt ABC transporter (EC:3.6.3.30); K02006 cobalt/nickel transport system ATP-binding protein
Cobalt ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7R8_9BIFI
71_008_scaffold_312_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13869..14678
DNA (810bp) protein (270aa)
Cobalt transport protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7R7_9BIFI
Cobalt transport protein {ECO:0000313|EMBL:ETO97733.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
cbiQ; CbiQ Cobalt transport protein; K02008 cobalt/nickel transport system permease protein
71_008_scaffold_312_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14712..15710
DNA (999bp) protein (333aa)
AsnC family transcriptional regulator n=2 Tax=Bifidobacterium dentium RepID=D2Q9I8_BIFDB
Winged helix-turn-helix DNA-binding protein {ECO:0000313|EMBL:ETO97837.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
AsnC family transcriptional regulator
71_008_scaffold_312_14
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15830..16621
DNA (792bp) protein (264aa)
ABC transporter ATP-binding protein (EC:3.6.3.20); K02003 putative ABC transport system ATP-binding protein
ATP-binding protein of ABC transporter system n=2 Tax=Bifidobacterium dentium RepID=D2Q9I9_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26774.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
71_008_scaffold_312_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16671..19310
DNA (2640bp) protein (880aa)
Efflux ABC transporter, permease protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7R4_9BIFI
MacB-like periplasmic core domain protein {ECO:0000313|EMBL:ETO97888.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
ABC transporter permease; K02004 putative ABC transport system permease protein
71_008_scaffold_312_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19444..20190)
DNA (747bp) protein (249aa)
two-component response regulator (EC:3.1.1.61)
Two-component response regulator n=2 Tax=Bifidobacterium dentium RepID=D2Q9J1_BIFDB
Response regulator receiver domain protein {ECO:0000313|EMBL:ETO97785.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_312_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20221..20814)
DNA (594bp) protein (198aa)
two component system histidine kinase (EC:2.7.13.3)
Two component system histidine kinase n=2 Tax=Bifidobacterium dentium RepID=D2Q9J2_BIFDB
Histidine kinase dimerization/phosphoacceptor domain protein {ECO:0000313|EMBL:ETO97889.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Displaying 19 items

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