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71_008_scaffold_468

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_468_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(159..767)
DNA (609bp) protein (203aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase n=1 Tax=Bifidobacterium dentium JCVIHMP022 RepID=E1NCQ8_9BIFI
71_008_scaffold_468_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(827..1756)
DNA (930bp) protein (310aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000313|EMBL:ETO98313.1}; EC=4.1.1.23 {ECO:0000313|EMBL:ETO98313.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase n=2 Tax=Bifidobacterium dentium RepID=B1S6S0_9BIFI
71_008_scaffold_468_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1759..5139)
DNA (3381bp) protein (1127aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=2 Tax=Bifidobacterium dentium RepID=D2Q9B4_BIFDB
71_008_scaffold_468_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5132..6349)
DNA (1218bp) protein (406aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
carA; arbamoyl-phosphate synthase small chain (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q9B3_BIFDB
71_008_scaffold_468_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6439..6882)
DNA (444bp) protein (148aa)
N utilization substance protein B homolog n=3 Tax=Bifidobacterium dentium RepID=B1S545_9BIFI
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
nusB; transcription antitermination factor NusB; K03625 N utilization substance protein B
71_008_scaffold_468_6
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6908..7471)
DNA (564bp) protein (188aa)
Elongation factor P n=3 Tax=Bifidobacterium RepID=B6XXF9_9BIFI
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
elongation factor P; K02356 elongation factor P
71_008_scaffold_468_7
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(7655..8854)
DNA (1200bp) protein (400aa)
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
Elongation factor Tu n=3 Tax=Bifidobacterium dentium RepID=B1S547_9BIFI
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
71_008_scaffold_468_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9027..11156)
DNA (2130bp) protein (710aa)
fusA; protein translation Elongation Factor G (EF-G) (EC:2.7.7.4); K02355 elongation factor G
Elongation factor G n=4 Tax=Bifidobacterium dentium RepID=D2Q9A9_BIFDB
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_008_scaffold_468_9
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(11188..11658)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=5 Tax=Bifidobacterium RepID=D2Q9A8_BIFDB
rpsG; 30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
71_008_scaffold_468_10
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(11664..12035)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=6 Tax=Bifidobacterium RepID=RS12_BIFAA
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
71_008_scaffold_468_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12815..13102)
DNA (288bp) protein (96aa)
Transporter, Sodium/bile acid symporter family n=4 Tax=Bifidobacterium dentium RepID=D2Q9A6_BIFDB
Uncharacterized protein {ECO:0000313|EMBL:ETO98054.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Sodium/bile acid symporter family transporter; K03453 bile acid:Na+ symporter, BASS family
71_008_scaffold_468_trna_1
unknown

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13274..13346
DNA (73bp)
transferRNA His
71_008_scaffold_468_12
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13428..13883
DNA (456bp) protein (152aa)
low specificity-threonine aldolase (EC:4.1.2.5); K01620 threonine aldolase [EC:4.1.2.5]
Low specificity-threonine aldolase {ECO:0000313|EMBL:ADB09391.1}; EC=4.1.2.5 {ECO:0000313|EMBL:ADB09391.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Low specificity-threonine aldolase n=2 Tax=Bifidobacterium dentium RepID=D2Q9A5_BIFDB
Displaying 13 items

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