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71_008_scaffold_109

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Displaying items 1-30 of 165 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_109_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

211..462
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Escherichia coli RepID=UPI0002B9D95E
Uncharacterized protein {ECO:0000313|EMBL:EQX30745.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
71_008_scaffold_109_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(607..768)
DNA (162bp) protein (54aa)
Uncharacterized protein n=14 Tax=Escherichia coli RepID=M8S4N1_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EQX30746.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
71_008_scaffold_109_3
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

873..1412
DNA (540bp) protein (180aa)
Clp protease family protein n=13 Tax=Escherichia coli RepID=M8QWA9_ECOLX
hypothetical protein
Peptidase {ECO:0000313|EMBL:KDE37377.1}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
71_008_scaffold_109_4
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1360..2595
DNA (1236bp) protein (412aa)
Phage integrase family protein n=13 Tax=Escherichia coli RepID=M9HB25_ECOLX
integrase family protein
Integrase {ECO:0000313|EMBL:KDE37376.1}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
71_008_scaffold_109_5
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2597..2833
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Escherichia coli RepID=UPI0002B98E9A
DNA binding protein from phage origin
DNA-binding protein {ECO:0000313|EMBL:KDE37375.1}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
71_008_scaffold_109_6
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2880..3590)
DNA (711bp) protein (237aa)
Uncharacterized protein n=14 Tax=Escherichia coli RepID=M8R797_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KDE37374.1}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
hypothetical protein
71_008_scaffold_109_7
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3644..3835)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CCW1_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KDE37373.1}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
hypothetical protein
71_008_scaffold_109_8
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3973..4260
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Escherichia coli 179550 RepID=N2MA53_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KDE37372.1}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
hypothetical protein
71_008_scaffold_109_9
Enterobacter asburiae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4253..4432
DNA (180bp) protein (60aa)
Uncharacterized protein n=15 Tax=Escherichia coli RepID=M8RJ05_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJM19205.1}; TaxID=61645 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter asburiae.;"
71_008_scaffold_109_10
Enterobacter asburiae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4437..4760
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Escherichia coli RepID=UPI0002BBF157
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJM19206.1}; TaxID=61645 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter asburiae.;"
71_008_scaffold_109_11
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4757..6166
DNA (1410bp) protein (470aa)
AAA domain protein n=13 Tax=Escherichia coli RepID=M8QWA5_ECOLX
DNA primase
Phage-associated DNA primase {ECO:0000313|EMBL:EHC82212.1}; TaxID=913082 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Senftenberg str. A4-543.;"
71_008_scaffold_109_12
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6475..7188)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Escherichia coli RepID=UPI0002BAE9C1
Uncharacterized protein {ECO:0000313|EMBL:EAZ97166.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
hypothetical protein
71_008_scaffold_109_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7334..7546
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=M8TWS2_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQN24681.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
71_008_scaffold_109_14
Kluyvera ascorbata, Kluyvera, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7543..9459
DNA (1917bp) protein (639aa)
ATP-dependent Clp protease proteolytic subunit n=13 Tax=Escherichia coli RepID=M8RW40_ECOLX
ATP-dependent protease
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}; TaxID=1006000 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kluyvera.;" source="Kluyvera ascorbata ATCC 33433.;"
71_008_scaffold_109_15
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9849..10739)
DNA (891bp) protein (297aa)
Uncharacterized protein n=13 Tax=Escherichia coli RepID=M8RJ01_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KDE37367.1}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
hypothetical protein
71_008_scaffold_109_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11492..13102
DNA (1611bp) protein (537aa)
Clp protease family protein n=15 Tax=Escherichia coli RepID=M8QWA0_ECOLX
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
ATP-dependent protease
71_008_scaffold_109_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13360..13845
DNA (486bp) protein (162aa)
Bacteriophage DNA packaging protein n=17 Tax=Enterobacteriaceae RepID=E9WJJ1_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EQX30748.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
hypothetical protein
71_008_scaffold_109_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13848..14129
DNA (282bp) protein (94aa)
Uncharacterized protein n=16 Tax=Escherichia coli RepID=M8R788_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EQX30749.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
hypothetical protein
71_008_scaffold_109_trna_2
unknown

Not on your lists

comp(14674..14746)
DNA (73bp)
transferRNA Met
71_008_scaffold_109_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14871..15377
DNA (507bp) protein (169aa)
G/U mismatch-specific DNA glycosylase; K03649 TDG/mug DNA glycosylase family protein [EC:3.2.2.-]
G/U mismatch-specific DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_01956}; EC=3.2.2.28 {ECO:0000256|HAMAP-Rule:MF_01956};; Double-strand-specific uracil glycosylase {ECO:0000256|HAMAP-Rule:MF_01956}; Mismatch-specific uracil DNA-glycosylase {ECO:0000256|HAMAP-Rule:MF_01956}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
G/U mismatch-specific DNA glycosylase n=1012 Tax=Enterobacteriaceae RepID=MUG_ECO45
71_008_scaffold_109_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15455..15778)
DNA (324bp) protein (108aa)
RNA polymerase sigma factor RpoD n=3 Tax=Escherichia coli RepID=N2X870_ECOLX
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1169343 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE24.;"
71_008_scaffold_109_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15759..17309)
DNA (1551bp) protein (517aa)
RNA polymerase sigma factor RpoD n=1 Tax=Shigella flexneri RepID=Q7UBI5_SHIFL
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1446599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O146:H21 str. 2010C-3325.;"
71_008_scaffold_109_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17504..19249)
DNA (1746bp) protein (582aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
DNA primase n=882 Tax=Enterobacteriaceae RepID=DNAG_ECO57
71_008_scaffold_109_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19701..20714
DNA (1014bp) protein (338aa)
ygjD; DNA-binding/iron metalloprotein/AP endonuclease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1116067 species="Bacteria; Proteobacteria; Gammapr
tRNA N6-adenosine threonylcarbamoyltransferase n=525 Tax=Enterobacteriaceae RepID=TSAD_ECO24
71_008_scaffold_109_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20757..22166)
DNA (1410bp) protein (470aa)
L-tartrate/succinate antiporter n=1 Tax=Escherichia coli KTE142 RepID=L3UM88_ECOLX
ygjE; tartrate:succinate antiporter; K11106 L-tartrate/succinate antiporter
YgjE tartrate/succinate DASS transporter TtdT tartrate/succinate DASS transporter {ECO:0000313|EMBL:EHW13028.1}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
71_008_scaffold_109_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22245..22850)
DNA (606bp) protein (202aa)
ttdB; L(+)-tartrate dehydratase, beta subunit (EC:4.2.1.32); K03780 L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]
L(+)-tartrate dehydratase subunit beta {ECO:0000313|EMBL:KDY14795.1}; EC=4.2.1.32 {ECO:0000313|EMBL:KDY14795.1};; TaxID=1444235 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-316-03_S4_C2.;"
L(+)-tartrate dehydratase subunit beta n=989 Tax=Enterobacteriaceae RepID=TTDB_ECOL5
71_008_scaffold_109_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22847..23758)
DNA (912bp) protein (304aa)
ddtA; L(+)-tartrate dehydratase, alpha subunit; K03779 L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32]
L-tartrate dehydratase, alpha subunit {ECO:0000313|EMBL:CEK06934.1}; EC=4.2.1.32 {ECO:0000313|EMBL:CEK06934.1};; TaxID=244319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O26:H11.;"
L(+)-tartrate dehydratase subunit alpha n=579 Tax=Enterobacteriaceae RepID=TTDA_ECOL5
71_008_scaffold_109_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23965..24897
DNA (933bp) protein (311aa)
HTH-type transcriptional activator TtdR n=482 Tax=Enterobacteriaceae RepID=TTDR_ECOLI
transcriptional activator TtdR
HTH-type transcriptional regulator DmlR {ECO:0000313|EMBL:KEJ44804.1}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
71_008_scaffold_109_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24910..25527)
DNA (618bp) protein (206aa)
glycerol-3-phosphate acyltransferase PlsY; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
Glycerol-3-phosphate acyltransferase n=1383 Tax=Enterobacteriaceae RepID=PLSY_ECO24
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1269003 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908658.;"
71_008_scaffold_109_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25632..26000
DNA (369bp) protein (123aa)
folB; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase {ECO:0000313|EMBL:EII21036.1}; EC=4.1.2.25 {ECO:0000313|EMBL:EII21036.1};; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
Dihydroneopterin aldolase n=1055 Tax=Enterobacteriaceae RepID=FOLB_ECOL6
Displaying items 1-30 of 165 in total

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