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71_008_scaffold_117

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_117_trna_1
unknown

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comp(8..92)
DNA (85bp)
transferRNA Ser
71_008_scaffold_117_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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326..1264
DNA (939bp) protein (313aa)
ycdW; 2-ketoacid reductase; K12972 gyoxylate/hydroxypyruvate reductase A [EC:1.1.1.79 1.1.1.81]
Glyoxylate/hydroxypyruvate reductase A {ECO:0000256|HAMAP-Rule:MF_01666}; EC=1.1.1.79 {ECO:0000256|HAMAP-Rule:MF_01666};; EC=1.1.1.81 {ECO:0000256|HAMAP-Rule:MF_01666};; 2-ketoacid reductase {ECO:0000256|HAMAP-Rule:MF_01666}; TaxID=1125634 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 174750.;"
Glyoxylate/hydroxypyruvate reductase A n=341 Tax=Enterobacteriaceae RepID=GHRA_ECO8A
71_008_scaffold_117_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1319..2056
DNA (738bp) protein (246aa)
Probable phosphatase YcdX {ECO:0000256|HAMAP-Rule:MF_01561}; EC=3.1.3.- {ECO:0000256|HAMAP-Rule:MF_01561};; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O128:H2 str. 2011C-3317.;"
Probable phosphatase YcdX n=1088 Tax=Enterobacteriaceae RepID=YCDX_ECO45
hydrolase; K04477 putative hydrolase
71_008_scaffold_117_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2080..2634
DNA (555bp) protein (185aa)
Nitrate reductase delta subunit n=6 Tax=Escherichia coli RepID=I2SJH5_ECOLX
Cytoplasmic chaperone TorD {ECO:0000313|EMBL:ESD13756.1}; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
ycdY; hypothetical protein
71_008_scaffold_117_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2706..3227
DNA (522bp) protein (174aa)
Predicted inner membrane protein n=18 Tax=Escherichia coli RepID=E0IVK0_ECOLW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESD13757.1}; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
71_008_scaffold_117_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3291..4124)
DNA (834bp) protein (278aa)
Curli production assembly/transport component CsgG n=1221 Tax=Enterobacteriaceae RepID=CSGG_ECO57
Curli production assembly/transport component CsgG; K06214 curli production assembly/transport component CsgG
Curli production assembly/transport protein CsgG {ECO:0000313|EMBL:EYY82738.1}; TaxID=1446735 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O26:NM str. 2010C-4788.;"
71_008_scaffold_117_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4151..4567)
DNA (417bp) protein (139aa)
Curli production assembly/transport component CsgF n=1198 Tax=Enterobacteriaceae RepID=CSGF_ECO57
csgF; putative transport protein CsgF; K04338 curli production assembly/transport component CsgF
Putative curli production assembly/transport component CsgF {ECO:0000313|EMBL:EIG83580.1}; TaxID=869669 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1.2741.;"
71_008_scaffold_117_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4592..4981)
DNA (390bp) protein (130aa)
Curli production assembly/transport component CsgE n=1345 Tax=Enterobacteriaceae RepID=CSGE_ECO57
csgE; curli production assembly/transport component CsgE; K04337 curli production assembly/transport component CsgE
Curli production assembly/transport component, 2nd curli operon {ECO:0000313|EMBL:EHX34207.1}; TaxID=868191 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12A.;"
71_008_scaffold_117_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4986..5636)
DNA (651bp) protein (217aa)
CsgAB operon transcriptional regulatory n=1071 Tax=Enterobacteriaceae RepID=B2CY47_ECOLX
DNA-binding transcriptional regulator CsgD; K04333 LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
CsgBAC operon transcriptional regulatory protein {ECO:0000313|EMBL:EMW23276.1}; TaxID=1116125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2845650.;"
71_008_scaffold_117_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6390..6845
DNA (456bp) protein (152aa)
Minor curlin subunit n=1081 Tax=Enterobacteriaceae RepID=CSGB_ECO57
csgB; curlin nucleator protein CsgB; K04335 minor curlin subunit
Curlin nucleator protein, minor subunit in curli complex {ECO:0000313|EMBL:CAR07386.1}; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
71_008_scaffold_117_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6886..7341
DNA (456bp) protein (152aa)
Major curlin subunit n=583 Tax=Enterobacteriaceae RepID=CSGA_ECOLI
cryptic curlin major subunit; K04334 major curlin subunit
Major curlin subunit {ECO:0000313|EMBL:EOV80530.1}; TaxID=1182680 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE73.;"
71_008_scaffold_117_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7400..7732
DNA (333bp) protein (111aa)
Curli assembly protein CsgC n=80 Tax=Escherichia coli RepID=M4JJC9_ECOLX
csgC; putative autoagglutination protein; K04336 curli production protein
Curli assembly protein CsgC {ECO:0000313|EMBL:EMX22341.1}; TaxID=1116066 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.1.;"
71_008_scaffold_117_12
Shigella sonnei, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7853..8164
DNA (312bp) protein (104aa)
Uncharacterized protein n=372 Tax=Enterobacteriaceae RepID=C3TEM2_ECOLX
ymdA; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ87783.1}; TaxID=300269 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella sonnei (strain Ss046).;"
71_008_scaffold_117_13
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8259..8792
DNA (534bp) protein (178aa)
O-acetyl-ADP-ribose deacetylase {ECO:0000256|HAMAP-Rule:MF_01205}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01205};; Regulator of RNase III activity {ECO:0000256|HAMAP-Rule:MF_01205}; TaxID=766138 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 965-58.;"
O-acetyl-ADP-ribose deacetylase n=862 Tax=Enterobacteriaceae RepID=YMDB_ECO57
RNase III inhibitor
71_008_scaffold_117_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8734..10215
DNA (1482bp) protein (494aa)
Cardiolipin synthase C {ECO:0000256|HAMAP-Rule:MF_01918}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01918};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01918};; TaxID=656414 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H736.;"
Uncharacterized protein n=204 Tax=Enterobacteriaceae RepID=B6I9C3_ECOSE
phospholipase D/transphosphatidylase
71_008_scaffold_117_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10223..11380)
DNA (1158bp) protein (386aa)
mdoC; glucans biosynthesis protein; K11941 glucans biosynthesis protein C [EC:2.1.-.-]
Glucans biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01066}; EC=2.1.-.- {ECO:0000256|HAMAP-Rule:MF_01066};; TaxID=749533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 84-1.;"
Glucans biosynthesis protein C n=615 Tax=Enterobacteriaceae RepID=OPGC_ECO27
71_008_scaffold_117_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11807..13309
DNA (1503bp) protein (501aa)
Glucans biosynthesis protein G n=6 Tax=Escherichia coli RepID=OPGG_ECO8A
mdoG; glucan biosynthesis protein G; K03670 periplasmic glucans biosynthesis protein
Glucans biosynthesis protein G {ECO:0000256|HAMAP-Rule:MF_01069}; Flags: Precursor;; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
71_008_scaffold_117_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13332..15845
DNA (2514bp) protein (838aa)
mdoH; glucosyltransferase MdoH; K03669 membrane glycosyltransferase [EC:2.4.1.-]
Glucans biosynthesis glucosyltransferase H {ECO:0000256|HAMAP-Rule:MF_01072, ECO:0000256|SAAS:SAAS00010833}; EC=2.4.1.- {ECO:0000256|HAMAP-Rule:MF_01072, ECO:0000256|SAAS:SAAS00010802};; TaxID=749538 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 116-1.;"
Glucans biosynthesis glucosyltransferase H n=707 Tax=Enterobacteriaceae RepID=OPGH_ECO57
71_008_scaffold_117_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16018..16245
DNA (228bp) protein (76aa)
Uncharacterized protein YceK n=844 Tax=Enterobacteriaceae RepID=YCEK_ECO57
yceK; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHU16975.1}; TaxID=868134 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1B.;"
71_008_scaffold_117_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16246..16620)
DNA (375bp) protein (125aa)
Acidic protein MsyB n=12 Tax=Enterobacteriaceae RepID=C3TEI7_ECOLX
msyB; hypothetical protein; K12147 acidic protein MsyB
Putative acidic protein MsyB {ECO:0000313|EMBL:ESD71290.1}; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
71_008_scaffold_117_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16703..17929)
DNA (1227bp) protein (409aa)
Multidrug resistance protein MdtG n=753 Tax=Enterobacteriaceae RepID=MDTG_ECO24
mdtG; drug efflux system protein MdtG; K08161 MFS transporter, DHA1 family, multidrug resistance protein
Multidrug resistance protein MdtG {ECO:0000256|HAMAP-Rule:MF_01528}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
71_008_scaffold_117_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18101..19021)
DNA (921bp) protein (307aa)
lpxL; lauryl-acyl carrier protein (ACP)-dependent acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Lipid A biosynthesis lauroyltransferase {ECO:0000256|HAMAP-Rule:MF_01942}; EC=2.3.1.241 {ECO:0000256|HAMAP-Rule:MF_01942};; Kdo(2)-lipid IV(A) lauroyltransferase {ECO:0000256|HAMAP-Rule:MF_01942}; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
Lipid A biosynthesis lauroyl acyltransferase n=1 Tax=Escherichia coli AI27 RepID=I1B6U2_ECOLX
71_008_scaffold_117_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19246..20298
DNA (1053bp) protein (351aa)
UPF0176 protein YceA n=364 Tax=Enterobacteriaceae RepID=YCEA_ECO24
yceA; hypothetical protein; K07146 UPF0176 protein
UPF0176 protein YceA {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
71_008_scaffold_117_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20340..20915)
DNA (576bp) protein (192aa)
Protein YceI n=928 Tax=Enterobacteriaceae RepID=YCEI_ECO57
yceI; hypothetical protein
Protein YceI {ECO:0000256|HAMAP-Rule:MF_00780}; Flags: Precursor;; TaxID=1444184 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-460-02_S3_C3.;"
71_008_scaffold_117_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20919..21485)
DNA (567bp) protein (189aa)
cytochrome B561 n=1 Tax=Escherichia coli RepID=UPI0003C364E8
cytochrome
Uncharacterized protein {ECO:0000313|EMBL:KEN72219.1}; TaxID=1444275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S4_C3.;"
71_008_scaffold_117_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21746..21859)
DNA (114bp) protein (38aa)
Uncharacterized protein YceO n=1149 Tax=Enterobacteriaceae RepID=YCEO_ECO57
yceO; hypothetical protein
Putative transmembrane protein {ECO:0000313|EMBL:CBJ00631.1}; TaxID=316401 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O78:H11 (strain H10407 / ETEC).;"
71_008_scaffold_117_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21907..23025)
DNA (1119bp) protein (373aa)
solA; N-methyltryptophan oxidase; K02846 N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
N-methyl-L-tryptophan oxidase {ECO:0000256|HAMAP-Rule:MF_00515}; Short=MTOX {ECO:0000256|HAMAP-Rule:MF_00515};; EC=1.5.3.- {ECO:0000256|HAMAP-Rule:MF_00515};; TaxID=585395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O103:H2 (strain 12009 / EHEC).;"
N-methyl-L-tryptophan oxidase n=185 Tax=Enterobacteriaceae RepID=MTOX_ECO55
71_008_scaffold_117_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23140..23394)
DNA (255bp) protein (85aa)
Uncharacterized protein n=781 Tax=Enterobacteriaceae RepID=C3TEE2_ECOLX
bssS; biofilm formation regulatory protein BssS; K12148 biofilm regulator BssS
Biofilm regulator BssS {ECO:0000313|EMBL:EGI51372.1}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H299.;"
71_008_scaffold_117_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23684..23929)
DNA (246bp) protein (82aa)
DNA-damage-inducible protein I n=4 Tax=Escherichia coli RepID=M9I8W5_ECOLX
DNA-damage-inducible protein I {ECO:0000313|EMBL:ESA61162.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
DNA damage-inducible protein I; K12149 DNA-damage-inducible protein I
71_008_scaffold_117_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24003..25049)
DNA (1047bp) protein (349aa)
pyrC; dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3]
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=1182704 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE108.;"
Dihydroorotase n=249 Tax=Enterobacteriaceae RepID=PYRC_ECO24
Displaying items 1-30 of 60 in total

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