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71_008_scaffold_345

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_345_trna_7
unknown

Not on your lists

comp(341..413)
DNA (73bp)
transferRNA Lys
71_008_scaffold_345_trna_6
unknown

Not on your lists

comp(450..522)
DNA (73bp)
transferRNA Lys
71_008_scaffold_345_trna_5
unknown

Not on your lists

comp(672..744)
DNA (73bp)
transferRNA Lys
71_008_scaffold_345_trna_4
unknown

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comp(751..823)
DNA (73bp)
transferRNA Val
71_008_scaffold_345_trna_3
unknown

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comp(976..1048)
DNA (73bp)
transferRNA Lys
71_008_scaffold_345_trna_2
unknown

Not on your lists

comp(1084..1156)
DNA (73bp)
transferRNA Val
71_008_scaffold_345_trna_1
unknown

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comp(1295..1367)
DNA (73bp)
transferRNA Lys
71_008_scaffold_345_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1552..2343)
DNA (792bp) protein (264aa)
Uncharacterized protein n=457 Tax=Enterobacteriaceae RepID=J7QD43_ECOLX
ybgF; hypothetical protein
Tol-pal system protein {ECO:0000313|EMBL:EYV13117.1}; TaxID=1446560 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O121:H19 str. 2010C-3609.;"
71_008_scaffold_345_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2353..2874)
DNA (522bp) protein (174aa)
Peptidoglycan-associated lipoprotein n=1021 Tax=Enterobacteriaceae RepID=PAL_ECO57
pal; peptidoglycan-associated outer membrane lipoprotein Pal; K03640 peptidoglycan-associated lipoprotein
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EQY76502.1}; TaxID=1281237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3304-1.;"
71_008_scaffold_345_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2909..4201)
DNA (1293bp) protein (431aa)
Protein TolB n=1345 Tax=Enterobacteriaceae RepID=TOLB_ECO24
tolB; periplasmic protein TolB; K03641 TolB protein
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1116135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.12.;"
71_008_scaffold_345_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4334..5599)
DNA (1266bp) protein (422aa)
TolA n=2 Tax=Escherichia coli RepID=D6HUB1_ECOLX
tolA; cell envelope integrity inner membrane protein TolA; K03646 colicin import membrane protein
Protein tolA {ECO:0000313|EMBL:EOW26894.1}; TaxID=1182703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE107.;"
71_008_scaffold_345_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5664..6092)
DNA (429bp) protein (143aa)
Protein TolR n=1326 Tax=Enterobacteriaceae RepID=TOLR_ECO57
tolR; membrane spanning protein in TolA-TolQ-TolR complex; K03560 biopolymer transport protein TolR
Protein TolR {ECO:0000313|EMBL:EFJ71674.1}; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
71_008_scaffold_345_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6096..6788)
DNA (693bp) protein (231aa)
Protein TolQ n=1033 Tax=Enterobacteriaceae RepID=TOLQ_ECO57
colicin uptake protein TolQ; K03562 biopolymer transport protein TolQ
Protein tolQ {ECO:0000313|EMBL:EOV97486.1}; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
71_008_scaffold_345_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6785..7189)
DNA (405bp) protein (135aa)
ybgC; acyl-CoA thioesterase, involved in phospholipid metabolism; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Acyl-CoA thioester hydrolase YbgC n=1300 Tax=Enterobacteriaceae RepID=YBGC_ECO57
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:ESD68701.1}; TaxID=1268996 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908541.;"
71_008_scaffold_345_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7339..7632)
DNA (294bp) protein (98aa)
Uncharacterized protein YbgE n=1326 Tax=Enterobacteriaceae RepID=YBGE_ECO57
ybgE; hypothetical protein
Cyd operon protein YbgE {ECO:0000313|EMBL:EGI47207.1}; TaxID=656408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H591.;"
71_008_scaffold_345_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7632..7745)
DNA (114bp) protein (38aa)
Cytochrome bd-I ubiquinol oxidase subunit X n=1419 Tax=Enterobacteriaceae RepID=CYDX_ECOLI
hypothetical protein
Cyd operon protein YbgT {ECO:0000313|EMBL:EFJ84752.1}; TaxID=749533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 84-1.;"
71_008_scaffold_345_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7760..8899)
DNA (1140bp) protein (380aa)
cydB; cytochrome d terminal oxidase, subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome bd-I ubiquinol oxidase subunit 2 n=1361 Tax=Enterobacteriaceae RepID=CYDB_ECO57
Cytochrome D ubiquinol oxidase, subunit II {ECO:0000313|EMBL:EGI10252.1}; TaxID=656414 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H736.;"
71_008_scaffold_345_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8915..10483)
DNA (1569bp) protein (523aa)
cydA; cytochrome d terminal oxidase, subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome bd-I ubiquinol oxidase subunit 1 n=1270 Tax=Enterobacteriaceae RepID=CYDA_ECOL6
Cytochrome d ubiquinol oxidase subunit 1 {ECO:0000313|EMBL:EOU72422.1}; TaxID=1169339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE20.;"
71_008_scaffold_345_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11331..13964)
DNA (2634bp) protein (878aa)
Alpha-mannosidase n=64 Tax=Escherichia coli RepID=B7LAD8_ECO55
alpha-mannosidase
Alpha-mannosidase {ECO:0000313|EMBL:AFS75470.1}; TaxID=1133852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O104:H4 (strain 2011C-3493).;"
71_008_scaffold_345_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13982..15898)
DNA (1917bp) protein (639aa)
PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; K11198 PTS system, 2-O-A-mannosyl-D-glycerate-specific IIA component [EC:2.7.1.69]; K11199 PTS system, 2-O-A-mannosyl-D-glycerate-specific IIB component [EC:2.7.1.69]; K11200 PTS system, 2-O-A-mannosyl-D-glycerate-specific IIC component
Protein modification enzyme, induction of ompC n=137 Tax=Enterobacteriaceae RepID=J7QYQ5_ECOLX
Heat-responsive suppressor hrsA {ECO:0000313|EMBL:EFE63240.2}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
71_008_scaffold_345_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16067..16789
DNA (723bp) protein (241aa)
Transcriptional regulator of succinylCoA synthetase operon n=333 Tax=Enterobacteriaceae RepID=J7QD32_ECOLX
mngA; DNA-binding transcriptional repressor MngR; K11922 GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
MngR {ECO:0000313|EMBL:EHX34539.1}; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
71_008_scaffold_345_15
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16893..17762)
DNA (870bp) protein (290aa)
sucD; succinyl-CoA ligase, alpha subunit SucD; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=766141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 5216-82.;"
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1324 Tax=Enterobacteriaceae RepID=SUCD_ECO57
71_008_scaffold_345_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17762..18928)
DNA (1167bp) protein (389aa)
sucC; succinyl-CoA synthetase, beta subunit; K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
Succinyl-CoA ligase [ADP-forming] subunit beta n=1331 Tax=Enterobacteriaceae RepID=SUCC_ECO24
71_008_scaffold_345_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19022..20239)
DNA (1218bp) protein (406aa)
sucB; dihydrolipoamide succinyltransferase (EC:2.3.1.61); K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=1169355 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE38.;"
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex n=744 Tax=Enterobacteriaceae RepID=ODO2_ECO57
71_008_scaffold_345_18
Escherichia sp. KTE114, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20254..20355)
DNA (102bp) protein (34aa)
sucA; 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2)
Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component n=1 Tax=Escherichia coli MP021017.2 RepID=M8NDA2_ECOLX
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:EOU45299.1}; TaxID=1169321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE114.;"
Displaying 25 items

View Taxonomy