ggKbase home page

71_008_scaffold_405

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_405_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..766
DNA (765bp) protein (255aa)
pflB2; formate acetyltransferase (EC:2.3.1.54); K00656 formate C-acetyltransferase [EC:2.3.1.54]
Formate acetyltransferase n=1 Tax=Escherichia coli P0304816.7 RepID=N4C999_ECOLX
Formate acetyltransferase {ECO:0000313|EMBL:EGU97855.1}; TaxID=796392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 79-10.;"
71_008_scaffold_405_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

958..1698
DNA (741bp) protein (247aa)
pflA; pyruvate formate lyase-activating enzyme 1; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4]
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1116135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.12.;"
Pyruvate formate-lyase 1-activating enzyme n=1300 Tax=Enterobacteriaceae RepID=PFLA_ECO57
71_008_scaffold_405_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1780..2370)
DNA (591bp) protein (197aa)
hypothetical protein; K00358 [EC:1.6.99.-]
NAD(P)H dehydrogenase n=71 Tax=Escherichia coli RepID=B6I8X3_ECOSE
NADPH-dependent FMN reductase family protein {ECO:0000313|EMBL:KEJ64391.1}; TaxID=1444223 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-267-03_S4_C1.;"
71_008_scaffold_405_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2470..3378
DNA (909bp) protein (303aa)
Predicted DNA-binding transcriptional regulator n=144 Tax=Enterobacteriaceae RepID=E0IZE2_ECOLW
ycaN; putative DNA-binding transcriptional regulator
LysR substrate binding domain protein {ECO:0000313|EMBL:EIH79250.1}; TaxID=869681 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0522.;"
71_008_scaffold_405_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3379..4809)
DNA (1431bp) protein (477aa)
Inner membrane transporter YcaM n=1 Tax=Escherichia coli H591 RepID=F4VCS3_ECOLX
ycaM; transporter
Amino acid permease-associated region {ECO:0000313|EMBL:ADX51527.1}; TaxID=595495 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain ATCC 55124 / KO11).;"
71_008_scaffold_405_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5019..6167)
DNA (1149bp) protein (383aa)
Uncharacterized MFS-type transporter YcaD n=151 Tax=Enterobacteriaceae RepID=YCAD_ECO24
putative MFS family transporter protein; K08219 MFS transporter, UMF2 family, putative MFS family transporter protein
Uncharacterized MFS-type transporter YcaD {ECO:0000255|HAMAP-Rule:MF_01149}; TaxID=585034 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O8 (strain IAI1).;"
71_008_scaffold_405_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6481..7107
DNA (627bp) protein (209aa)
Uncharacterized protein n=143 Tax=Escherichia coli RepID=J7QP32_ECOLX
hydrolase
Protein YcaC {ECO:0000313|EMBL:EOW22088.1}; TaxID=1182704 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE108.;"
71_008_scaffold_405_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7143..8006)
DNA (864bp) protein (288aa)
Anaerobic dimethyl sulfoxide reductase chain C n=333 Tax=Enterobacteriaceae RepID=DMSC_ECOLI
DMSO reductase anchor subunit DmsC; K07308 anaerobic dimethyl sulfoxide reductase subunit C (DMSO reductase anchor subunit)
DMSO reductase anchor subunit family protein {ECO:0000313|EMBL:KDU32180.1}; TaxID=1444252 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-373-03_S4_C2.;"
71_008_scaffold_405_9
Escherichia sp. KTE52, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8008..8625)
DNA (618bp) protein (206aa)
Anaerobic dimethyl sulfoxide reductase chain B n=940 Tax=Enterobacteriaceae RepID=DMSB_ECOLI
dmsB; anaerobic dimethyl sulfoxide reductase chain B; K07307 anaerobic dimethyl sulfoxide reductase subunit B (DMSO reductase iron- sulfur subunit)
Anaerobic dimethyl sulfoxide reductase chain B {ECO:0000313|EMBL:EOV50948.1}; TaxID=1182659 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE52.;"
71_008_scaffold_405_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8636..11080)
DNA (2445bp) protein (815aa)
dmsA; dimethyl sulfoxide reductase, anaerobic subunit A; K07306 anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
Anaerobic dimethyl sulfoxide reductase chain A n=31 Tax=Escherichia coli RepID=D8EAF5_ECOLX
Anaerobic dimethyl sulfoxide reductase chain A {ECO:0000313|EMBL:ESA60576.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
71_008_scaffold_405_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11319..12611)
DNA (1293bp) protein (431aa)
serS; seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=868141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2D.;"
Serine--tRNA ligase n=1347 Tax=Enterobacteriaceae RepID=SYS_ECO24
71_008_scaffold_405_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12702..14045)
DNA (1344bp) protein (448aa)
Recombination protein n=117 Tax=Enterobacteriaceae RepID=B7LD84_ECO55
rarA; recombination protein; K07478 putative ATPase
Recombinase RarA {ECO:0000313|EMBL:ETD62307.1}; TaxID=1405293 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ATCC BAA-2209.;"
71_008_scaffold_405_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14056..14667)
DNA (612bp) protein (204aa)
Outer-membrane lipoprotein carrier protein n=1274 Tax=Enterobacteriaceae RepID=LOLA_ECO24
lolA; outer membrane lipoprotein carrier protein LolA; K03634 outer membrane lipoprotein carrier protein
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; Flags: Precursor;; TaxID=656419 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M718.;"
71_008_scaffold_405_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14822..16339)
DNA (1518bp) protein (506aa)
DNA translocase ftsK n=2 Tax=Escherichia coli RepID=L4WUJ5_ECOLX
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
DNA translocase FtsK {ECO:0000313|EMBL:EGI10429.1}; TaxID=656414 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H736.;"
71_008_scaffold_405_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16332..16685)
DNA (354bp) protein (118aa)
DNA-binding membrane protein required for chromosome resolution and partitioning n=44 Tax=Escherichia coli RepID=B7LD82_ECO55
ftsK; DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
Cell division protein FtsK {ECO:0000313|EMBL:AKE85181.1}; TaxID=1048254 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O104:H4 str. C227-11.;"
71_008_scaffold_405_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16702..18861)
DNA (2160bp) protein (720aa)
DNA translocase ftsK n=3 Tax=Escherichia coli RepID=M9E7Z2_ECOLX
DNA translocase ftsK {ECO:0000313|EMBL:ENA09178.1}; TaxID=1116047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0299917.1.;"
cell division protein; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
71_008_scaffold_405_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18996..19490)
DNA (495bp) protein (165aa)
Leucine-responsive regulatory protein n=1422 Tax=Enterobacteriaceae RepID=LRP_ECO57
lrp; leucine-responsive transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
Leucine-responsive regulatory protein {ECO:0000313|EMBL:EYD85829.1}; TaxID=1444161 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-176-05_S3_C2.;"
71_008_scaffold_405_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20034..20999
DNA (966bp) protein (322aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
Thioredoxin reductase n=764 Tax=Enterobacteriaceae RepID=TRXB_ECO57
71_008_scaffold_405_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21122..22888
DNA (1767bp) protein (589aa)
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD n=9 Tax=Escherichia coli RepID=G2AD80_ECOLX
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD {ECO:0000313|EMBL:EGW95843.1}; TaxID=754086 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli STEC_DG131-3.;"
cydD; fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component; K16013 ATP-binding cassette, subfamily C, bacterial CydD
71_008_scaffold_405_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22889..24610
DNA (1722bp) protein (574aa)
ATP-binding component of cytochrome-related transport n=257 Tax=Escherichia coli RepID=J7R2N3_ECOLX
Amino acid ABC transporter permease {ECO:0000313|EMBL:AKE85185.1}; TaxID=1048254 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O104:H4 str. C227-11.;"
cysteine/glutathione ABC transporter membrane/ATP-binding component
71_008_scaffold_405_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24652..25356
DNA (705bp) protein (235aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=796392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 79-10.;"
Leucyl/phenylalanyl-tRNA--protein transferase n=668 Tax=Enterobacteriaceae RepID=LFTR_ECO24
71_008_scaffold_405_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25641..25859
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=2194 Tax=Bacteria RepID=IF1_CITK8
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075, ECO:0000313|EMBL:AEQ11731.1}; TaxID=1072459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O7:K1 str. CE10.;"
71_008_scaffold_405_trna_1
unknown

Not on your lists

26113..26197
DNA (85bp)
transferRNA Ser
71_008_scaffold_405_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26549..28825)
DNA (2277bp) protein (759aa)
ATP-dependent clp protease ATP-binding subunit clpA n=7 Tax=Enterobacteriaceae RepID=Q1RE40_ECOUT
clpA; ATP-dependent Clp protease ATP-binding subunit; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:EOV64624.1}; TaxID=1182676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE69.;"
71_008_scaffold_405_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28853..29173)
DNA (321bp) protein (107aa)
ATP-dependent Clp protease adapter protein ClpS n=1383 Tax=Enterobacteriaceae RepID=CLPS_ECO24
ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=868134 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1B.;"
71_008_scaffold_405_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29960..30244)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=U0AC54_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KHI97446.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
hypothetical protein
71_008_scaffold_405_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30256..30798)
DNA (543bp) protein (181aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=U0A1G5_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EQV93328.1}; TaxID=1281168 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KOEGE 71 (186a).;"
phage DNA packaging protein Nu1
Displaying 27 items

View Taxonomy