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71_008_Escherichia_coli_51_159

In projects: 71_008

Consensus taxonomy: Escherichia coli  →  Escherichia  →  Enterobacteriales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 106 in total
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contig # features sequence size GC content (%) Cov Coding Density (%) notes
71_008_scaffold_1675
Species: Escherichia coli (100%)
4 1986 bp 45.37 151.96 101.21
71_008_scaffold_2423
Species: Escherichia coli (100%)
3 1186 bp 56.91 122.68 100.68
71_008_scaffold_2424
Species: Escherichia coli (100%)
3 1186 bp 56.41 111.30 100.68
71_008_scaffold_2030
Species: Salmonella enterica (50%)
2 1494 bp 58.17 191.16 100.20
71_008_scaffold_2470
Species: Escherichia coli (100%)
1 1543 bp 55.74 110.89 99.94
71_008_scaffold_2055
Species: Escherichia coli (100%)
1 1468 bp 56.47 142.85 99.93
71_008_scaffold_2696
Species: Escherichia coli (100%)
1 1462 bp 56.57 164.09 99.93
71_008_scaffold_2571
Species: Escherichia coli (100%)
1 1100 bp 55.91 196.91 99.82
71_008_scaffold_1982
Species: Escherichia coli (100%)
3 1549 bp 54.10 198.71 99.35
71_008_scaffold_1701
Species: Escherichia coli (100%)
2 2571 bp 54.76 160.83 98.60
71_008_scaffold_1211
Species: Escherichia coli (100%)
3 3564 bp 53.59 183.64 97.47
71_008_scaffold_2212
Species: Escherichia coli (50%)
4 1337 bp 53.18 58.26 96.71
71_008_scaffold_2166
Species: Escherichia coli (100%)
2 1374 bp 52.77 153.28 95.41
71_008_scaffold_2006
Species: Cronobacter sakazakii (50%)
2 1522 bp 52.17 58.67 95.40
71_008_scaffold_1877
Species: Escherichia coli (50%)
2 1687 bp 53.53 143.86 95.14
71_008_scaffold_2127
Species: Escherichia coli (100%)
2 1418 bp 50.42 122.36 94.99
71_008_scaffold_524
Order: Enterobacteriales (100%)
18 12219 bp 49.23 87.20 94.45
71_008_scaffold_823
Species: Salmonella enterica (66.67%)
3 6651 bp 49.56 73.46 93.96
71_008_scaffold_2608
Species: Escherichia coli (100%)
2 1079 bp 50.79 226.88 93.70
71_008_scaffold_4370
Species: Escherichia coli (100%)
3 1039 bp 47.35 212.03 93.55
71_008_scaffold_361
Species: Escherichia coli (91.11%)
45 45647 bp 52.41 184.53 93.54
71_008_scaffold_1127
Species: Escherichia coli (62.5%)
8 3806 bp 49.53 144.80 92.46
71_008_scaffold_1726
Species: Escherichia coli (100%)
3 1899 bp 47.66 149.08 92.42
71_008_scaffold_940
Species: Escherichia coli (58.82%)
17 7252 bp 50.36 200.30 92.37
71_008_scaffold_83
Species: Escherichia coli (98.58%)
141 166129 bp 52.28 166.63 92.05
71_008_scaffold_859
Species: Escherichia coli (100%)
18 11161 bp 48.88 182.04 91.90
71_008_scaffold_841
Species: Escherichia coli (100%)
7 7424 bp 51.19 124.87 91.89
71_008_scaffold_194
Species: Escherichia coli (97.37%)
39 37576 bp 53.81 143.25 91.86
71_008_scaffold_355
Species: Escherichia coli (88.57%)
35 33644 bp 51.95 168.18 91.77
71_008_scaffold_910
Species: Escherichia coli (75%)
8 5894 bp 50.61 145.08 91.67
71_008_scaffold_337
Species: Escherichia coli (85.71%)
21 20351 bp 54.04 185.00 91.22
71_008_scaffold_114
Species: Escherichia coli (96.26%)
187 192506 bp 52.60 157.32 91.20
71_008_scaffold_3504
Species: Escherichia coli (100%)
3 1320 bp 51.52 176.59 91.14
71_008_scaffold_213
Species: Escherichia coli (92.73%)
57 58852 bp 51.38 167.23 90.66
71_008_scaffold_252
Species: Escherichia coli (91.89%)
43 43377 bp 52.39 186.01 90.56
71_008_scaffold_521
Species: Escherichia coli (100%)
16 12328 bp 56.03 132.42 90.50
71_008_scaffold_273
Species: Escherichia coli (95.65%)
23 33080 bp 52.52 188.40 90.13
71_008_scaffold_369
Species: Escherichia coli (86.49%)
37 38916 bp 50.06 131.84 89.87
71_008_scaffold_98
Species: Escherichia coli (96.61%)
119 134675 bp 51.09 147.76 89.77
71_008_scaffold_2549
Species: Escherichia coli (100%)
2 1113 bp 57.23 85.98 89.76
71_008_scaffold_150
Species: Escherichia coli (97.49%)
204 188490 bp 50.83 164.42 89.52
71_008_scaffold_2584
Species: Escherichia coli (100%)
2 1090 bp 57.43 77.43 89.45
71_008_scaffold_319
Species: Escherichia coli (83.33%)
18 20405 bp 50.37 186.77 89.45
71_008_scaffold_177
Species: Escherichia coli (97.44%)
39 42047 bp 50.41 139.48 89.35
71_008_scaffold_1538
Species: Klebsiella oxytoca (100%)
2 2280 bp 47.63 134.91 89.34
71_008_scaffold_48
Species: Escherichia coli (95.91%)
276 307328 bp 50.80 149.70 89.32
71_008_scaffold_179
Species: Escherichia coli (97.78%)
45 43677 bp 51.96 171.27 89.26
71_008_scaffold_69
Species: Escherichia coli (94.07%)
135 143007 bp 51.55 150.46 89.26
71_008_scaffold_515
Species: Escherichia coli (95.45%)
22 23558 bp 50.71 146.92 89.19
71_008_scaffold_212
Species: Escherichia coli (98.55%)
141 146855 bp 48.97 167.85 89.09
Displaying items 1-50 of 106 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.