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71_008_scaffold_227

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_227_1
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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3..359
DNA (357bp) protein (119aa)
UPI0003D69554 related cluster n=1 Tax=unknown RepID=UPI0003D69554
Siroheme synthase protein {ECO:0000313|EMBL:ETI87236.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
71_008_scaffold_227_2
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

328..1623
DNA (1296bp) protein (432aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70]
UPI0003D5A679 related cluster n=1 Tax=unknown RepID=UPI0003D5A679
71_008_scaffold_227_3
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

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1613..2554
DNA (942bp) protein (314aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
UPI0003D63C98 related cluster n=1 Tax=unknown RepID=UPI0003D63C98
71_008_scaffold_227_4
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2556..4079
DNA (1524bp) protein (508aa)
hemD; uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase (EC:2.1.1.107 4.2.1.75); K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
Uroporphyrinogen III synthase/methyltransferase n=1 Tax=Selenomonas ruminantium subsp. ruminantium RepID=Q9AQ45_SELRU
HemD protein {ECO:0000313|EMBL:KGF11252.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
71_008_scaffold_227_5
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

4076..5062
DNA (987bp) protein (329aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
delta-aminolevulinic acid dehydratase; K01698 porphobilinogen synthase [EC:4.2.1.24]
UPI0003D5FBF0 related cluster n=1 Tax=unknown RepID=UPI0003D5FBF0
71_008_scaffold_227_6
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5059..6369
DNA (1311bp) protein (437aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
glutamate-1-semialdehyde-2,1-aminomutase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
UPI0003D610A6 related cluster n=1 Tax=unknown RepID=UPI0003D610A6
71_008_scaffold_227_7
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

6477..7412
DNA (936bp) protein (312aa)
UPI0003D62BAD related cluster n=1 Tax=unknown RepID=UPI0003D62BAD
Uncharacterized protein {ECO:0000313|EMBL:ETI88021.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
family 2 glycosyl transferase
71_008_scaffold_227_8
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

7572..8204
DNA (633bp) protein (211aa)
UPI0003D62607 related cluster n=1 Tax=unknown RepID=UPI0003D62607
NLP/P60 protein {ECO:0000313|EMBL:ETI88020.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
NLP/P60 protein
71_008_scaffold_227_9
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8258..8974
DNA (717bp) protein (239aa)
ABC transporter; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-]
UPI0003D5A0A0 related cluster n=1 Tax=unknown RepID=UPI0003D5A0A0
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ETI88019.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
71_008_scaffold_227_10
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8971..9789
DNA (819bp) protein (273aa)
UPI0003D5D93A related cluster n=1 Tax=unknown RepID=UPI0003D5D93A
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:ETI88018.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
ABC-3 protein; K09816 zinc transport system permease protein
71_008_scaffold_227_11
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

9841..10626
DNA (786bp) protein (262aa)
UPI0003D5EAFF related cluster n=1 Tax=unknown RepID=UPI0003D5EAFF
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ETI88017.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K08590 carbon-nitrogen hydrolase family protein
71_008_scaffold_227_12
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10706..13312
DNA (2607bp) protein (869aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
UPI0003D65C01 related cluster n=1 Tax=unknown RepID=UPI0003D65C01
71_008_scaffold_227_13
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13325..13585
DNA (261bp) protein (87aa)
UPI0003D596FB related cluster n=1 Tax=unknown RepID=UPI0003D596FB
Uncharacterized protein {ECO:0000313|EMBL:ETI89449.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein
71_008_scaffold_227_14
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13582..14061
DNA (480bp) protein (160aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
Holliday junction resolvase; K07447 putative holliday junction resolvase [EC:3.1.-.-]
UPI0003D68D48 related cluster n=1 Tax=unknown RepID=UPI0003D68D48
71_008_scaffold_227_15
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14015..14335
DNA (321bp) protein (107aa)
UPI0003D692A9 related cluster n=1 Tax=unknown RepID=UPI0003D692A9
Uncharacterized protein {ECO:0000313|EMBL:ETI89447.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein
71_008_scaffold_227_16
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14435..15478
DNA (1044bp) protein (348aa)
UPI0003D65076 related cluster n=1 Tax=unknown RepID=UPI0003D65076
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ETI89446.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein
71_008_scaffold_227_17
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15475..16818
DNA (1344bp) protein (448aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1230730 species="Bacteria; Fi
MiaB-like tRNA modifying enzyme YliG; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-]
UPI0003D65951 related cluster n=1 Tax=unknown RepID=UPI0003D65951
71_008_scaffold_227_18
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16818..17324
DNA (507bp) protein (169aa)
UPI0003D5BB80 related cluster n=1 Tax=unknown RepID=UPI0003D5BB80
Uncharacterized protein {ECO:0000313|EMBL:KGF11239.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
competence/damage-inducible protein CinA-like protein
71_008_scaffold_227_19
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17314..18366
DNA (1053bp) protein (351aa)
Protein RecA n=1 Tax=Veillonella sp. CAG:933 RepID=R5BFY7_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
recombinase A; K03553 recombination protein RecA
71_008_scaffold_227_20
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

18356..18820
DNA (465bp) protein (155aa)
UPI0003D5A5FE related cluster n=1 Tax=unknown RepID=UPI0003D5A5FE
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
Regulatory protein recX
71_008_scaffold_227_21
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18826..19080)
DNA (255bp) protein (85aa)
UPI0003D59EE9 related cluster n=1 Tax=unknown RepID=UPI0003D59EE9
Uncharacterized protein {ECO:0000313|EMBL:ETI86497.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
71_008_scaffold_227_22
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

19312..20832
DNA (1521bp) protein (507aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
metal dependent phosphohydrolase (EC:3.1.4.16); K06950 uncharacterized protein
UPI0003D5E230 related cluster n=1 Tax=unknown RepID=UPI0003D5E230
71_008_scaffold_227_23
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20929..22704
DNA (1776bp) protein (592aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
UPI0003D633D4 related cluster n=1 Tax=unknown RepID=UPI0003D633D4
71_008_scaffold_227_24
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

22725..23816
DNA (1092bp) protein (364aa)
UPI0003D62F79 related cluster n=1 Tax=unknown RepID=UPI0003D62F79
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor
71_008_scaffold_227_25
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23875..25755
DNA (1881bp) protein (627aa)
UPI0003D60D7F related cluster n=1 Tax=unknown RepID=UPI0003D60D7F
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor
71_008_scaffold_227_trna_1
unknown

Not on your lists

25810..25881
DNA (72bp)
transferRNA Met
71_008_scaffold_227_26
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

25939..26667
DNA (729bp) protein (243aa)
UPI0003D59FC7 related cluster n=1 Tax=unknown RepID=UPI0003D59FC7
Uncharacterized protein {ECO:0000313|EMBL:ETI86502.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
Predicted SAM-dependent methyltransferase
71_008_scaffold_227_27
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

26649..27764
DNA (1116bp) protein (372aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
UPI0003D67918 related cluster n=1 Tax=unknown RepID=UPI0003D67918
hypothetical protein
71_008_scaffold_227_28
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

28323..28649
DNA (327bp) protein (109aa)
UPI0003D68E93 related cluster n=1 Tax=unknown RepID=UPI0003D68E93
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein; K03671 thioredoxin 1
71_008_scaffold_227_29
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28802..28981
DNA (180bp) protein (60aa)
UPI0003D6214E related cluster n=1 Tax=unknown RepID=UPI0003D6214E
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
Displaying 30 items

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