ggKbase home page

71_008_scaffold_518

Search features with annotation key words

Displaying 18 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_518_1
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..287)
DNA (285bp) protein (95aa)
UPI0003D687A9 related cluster n=1 Tax=unknown RepID=UPI0003D687A9
UPF0348 protein HMPREF1633_04450 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
Predicted nucleotidyltransferase
71_008_scaffold_518_2
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

774..1178
DNA (405bp) protein (135aa)
UPI0003D67593 related cluster n=1 Tax=unknown RepID=UPI0003D67593
Translation initiation factor IF-3 {ECO:0000256|RuleBase:RU000646}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
71_008_scaffold_518_3
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


1190..1387
DNA (198bp) protein (66aa)
UPI0003D607F7 related cluster n=1 Tax=unknown RepID=UPI0003D607F7
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
LSU ribosomal protein L35P
71_008_scaffold_518_4
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


1406..1756
DNA (351bp) protein (117aa)
UPI0003D5AE39 related cluster n=1 Tax=unknown RepID=UPI0003D5AE39
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
71_008_scaffold_518_5
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


2008..2157
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IGN8_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypothetical protein; K02913 large subunit ribosomal protein L33
71_008_scaffold_518_6
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2194..2421
DNA (228bp) protein (76aa)
UPI0003D5D105 related cluster n=1 Tax=unknown RepID=UPI0003D5D105
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
71_008_scaffold_518_7
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2431..2982
DNA (552bp) protein (184aa)
UPI0003D60133 related cluster n=1 Tax=unknown RepID=UPI0003D60133
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
NusG antitermination factor; K02601 transcriptional antiterminator NusG
71_008_scaffold_518_8
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3054..3479
DNA (426bp) protein (142aa)
UPI0003D5A812 related cluster n=1 Tax=unknown RepID=UPI0003D5A812
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
71_008_scaffold_518_9
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


3511..4218
DNA (708bp) protein (236aa)
UPI0003D60A86 related cluster n=1 Tax=unknown RepID=UPI0003D60A86
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
71_008_scaffold_518_10
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


4399..4929
DNA (531bp) protein (177aa)
UPI0003D67DB4 related cluster n=1 Tax=unknown RepID=UPI0003D67DB4
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
71_008_scaffold_518_11
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4959..5330
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=2 Tax=Megamonas RepID=D4KEE6_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
LSU ribosomal protein L12P
71_008_scaffold_518_12
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

5427..5780
DNA (354bp) protein (118aa)
UPI0003D5A175 related cluster n=1 Tax=unknown RepID=UPI0003D5A175
Uncharacterized protein {ECO:0000313|EMBL:ETI86461.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
septum formation initiator
71_008_scaffold_518_13
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5857..6324
DNA (468bp) protein (156aa)
UPI0003D64DBB related cluster n=1 Tax=unknown RepID=UPI0003D64DBB
Uncharacterized protein {ECO:0000313|EMBL:KGF11770.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
general stress protein 13; K07571 S1 RNA binding domain protein
71_008_scaffold_518_14
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6377..7270
DNA (894bp) protein (298aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1CZV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF11769.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
71_008_scaffold_518_15
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

7267..8658
DNA (1392bp) protein (464aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
UPI0003D682B8 related cluster n=1 Tax=unknown RepID=UPI0003D682B8
71_008_scaffold_518_16
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8624..9163
DNA (540bp) protein (180aa)
UPI0003D59B8A related cluster n=1 Tax=unknown RepID=UPI0003D59B8A
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:KGF11767.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
hypoxanthine phosphoribosyltransferase
71_008_scaffold_518_17
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

9240..11234
DNA (1995bp) protein (665aa)
ATP-dependent zinc metalloprotease FtsH; K03798 cell division protease FtsH [EC:3.4.24.-]
UPI0003D5F083 related cluster n=1 Tax=unknown RepID=UPI0003D5F083
ATP-dependent zinc metalloprotease FtsH {ECO:0000313|EMBL:ETI86205.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
71_008_scaffold_518_18
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11370..12353
DNA (984bp) protein (328aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin--[acetyl-CoA-carboxylase] ligase n=2 Tax=Dialister micraerophilus RepID=F2BVU0_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
Displaying 18 items

View Taxonomy