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71_008_scaffold_110

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Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_110_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(202..1488)
DNA (1287bp) protein (429aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
hemL-1; glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Glutamate-1-semialdehyde 2,1-aminomutase n=2 Tax=Staphylococcus epidermidis RepID=C5QXR4_STAEP
71_008_scaffold_110_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1509..2483)
DNA (975bp) protein (325aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24]
Delta-aminolevulinic acid dehydratase n=19 Tax=Staphylococcus epidermidis RepID=C5QXR5_STAEP
71_008_scaffold_110_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2473..3153)
DNA (681bp) protein (227aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EES35846.1}; EC=4.2.1.75 {ECO:0000313|EMBL:EES35846.1};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
hemD; uroporphyrinogen-III synthase (EC:4.2.1.75); K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen-III synthase n=3 Tax=Staphylococcus epidermidis RepID=C5QXR6_STAEP
71_008_scaffold_110_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3187..4113)
DNA (927bp) protein (309aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase n=2 Tax=Staphylococcus epidermidis RepID=C5QXR7_STAEP
71_008_scaffold_110_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4165..4977)
DNA (813bp) protein (271aa)
Cytochrome c assembly protein n=22 Tax=Staphylococcus epidermidis RepID=C5QXR8_STAEP
Cytochrome C assembly protein {ECO:0000313|EMBL:ESV18854.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
hemA concentration negative effector; K02497 HemX protein
71_008_scaffold_110_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4999..6345)
DNA (1347bp) protein (449aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
hemA; glutamyl-tRNA reductase (EC:1.2.1.-); K02492 glutamyl-tRNA reductase [EC:1.2.1.70]
Glutamyl-tRNA reductase n=20 Tax=Staphylococcus epidermidis RepID=C5QXR9_STAEP
71_008_scaffold_110_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6515..7102)
DNA (588bp) protein (196aa)
GTP-binding protein YsxC n=27 Tax=Staphylococcus epidermidis RepID=V6QP93_STAEP
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
engB; ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein
71_008_scaffold_110_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7214..8476)
DNA (1263bp) protein (421aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=54 Tax=Staphylococcus epidermidis RepID=CLPX_STAEQ
clpX; ATP-dependent protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
71_008_scaffold_110_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8763..10064)
DNA (1302bp) protein (434aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
tig; trigger factor (EC:5.2.1.8); K03545 trigger factor
Trigger factor n=11 Tax=Staphylococcus epidermidis RepID=C5QXS2_STAEP
71_008_scaffold_110_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10225..11148)
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Staphylococcus epidermidis RepID=C5QXS3_STAEP
Uncharacterized protein {ECO:0000313|EMBL:EES35853.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
hypothetical protein
71_008_scaffold_110_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11165..11776)
DNA (612bp) protein (204aa)
Hydrolase, NUDIX family n=11 Tax=Staphylococcus epidermidis RepID=C5QXS4_STAEP
Hydrolase, NUDIX family {ECO:0000313|EMBL:EES35854.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
MutT/nudix family protein
71_008_scaffold_110_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(12196..12552)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=81 Tax=Staphylococcus epidermidis RepID=RL20_STAEQ
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
71_008_scaffold_110_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(12602..12802)
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=86 Tax=Staphylococcus RepID=RL35_STAEQ
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
71_008_scaffold_110_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12830..13357)
DNA (528bp) protein (176aa)
Translation initiation factor IF-3 n=81 Tax=Staphylococcus epidermidis RepID=IF3_STAEQ
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000255|HAMAP-Rule:MF_00080}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
71_008_scaffold_110_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13564..15066)
DNA (1503bp) protein (501aa)
Amino acid permease n=2 Tax=Staphylococcus epidermidis RepID=C5QXS8_STAEP
Amino acid permease {ECO:0000313|EMBL:EES35858.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
amino acid permease; K03293 amino acid transporter, AAT family
71_008_scaffold_110_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15495..17432)
DNA (1938bp) protein (646aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=6 Tax=Staphylococcus epidermidis RepID=C5QXS9_STAEP
71_008_scaffold_110_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17786..18706)
DNA (921bp) protein (307aa)
Primosomal protein DnaI n=20 Tax=Staphylococcus epidermidis RepID=C5QXT0_STAEP
Primosomal protein DnaI {ECO:0000313|EMBL:ESV18842.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
dnaI; primosomal protein DnaI; K11144 primosomal protein DnaI
71_008_scaffold_110_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18706..20076)
DNA (1371bp) protein (457aa)
Replication initiation and membrane attachment protein, DnaB/DnaD family n=5 Tax=Staphylococcus epidermidis RepID=C5QXT1_STAEP
Replication initiation and membrane attachment protein, DnaB/DnaD family {ECO:0000313|EMBL:EES35861.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
replication initiation and membrane attachment protein; K03346 replication initiation and membrane attachment protein
71_008_scaffold_110_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20077..20583)
DNA (507bp) protein (169aa)
Transcriptional repressor NrdR n=75 Tax=Staphylococcus epidermidis RepID=NRDR_STAEQ
nrdR; NrdR family transcriptional regulator; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR {ECO:0000255|HAMAP-Rule:MF_00440}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
71_008_scaffold_110_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21069..22094)
DNA (1026bp) protein (342aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
gapA-2; glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
Glyceraldehyde-3-phosphate dehydrogenase, type I n=15 Tax=Staphylococcus epidermidis RepID=C5QXT3_STAEP
71_008_scaffold_110_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22197..22403)
DNA (207bp) protein (69aa)
Uncharacterized protein n=4 Tax=Staphylococcus epidermidis RepID=C5QXT4_STAEP
Uncharacterized protein {ECO:0000313|EMBL:EES35864.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
transposase
71_008_scaffold_110_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22435..22584)
DNA (150bp) protein (50aa)
IS1272, transposase n=5 Tax=Staphylococcus epidermidis RepID=C5QXT5_STAEP
IS1272, transposase {ECO:0000313|EMBL:EES35865.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
truncated IS1272 transposase
71_008_scaffold_110_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22960..23571)
DNA (612bp) protein (204aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Dephospho-CoA kinase n=4 Tax=Staphylococcus epidermidis RepID=H0DP21_STAEP
71_008_scaffold_110_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23587..24459)
DNA (873bp) protein (291aa)
formamidopyrimidine-DNA glycosylase; K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054019};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
DNA-formamidopyrimidine glycosylase n=1 Tax=Staphylococcus epidermidis VCU071 RepID=H0DP22_STAEP
71_008_scaffold_110_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24475..27186)
DNA (2712bp) protein (904aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=11 Tax=Staphylococcus epidermidis RepID=V4Q475_STAEP
DNA polymerase I {ECO:0000313|EMBL:ESV20854.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
71_008_scaffold_110_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27414..29111)
DNA (1698bp) protein (566aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EES35870.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EES35870.1};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
alkaline phosphatase synthesis sensor protein; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=8 Tax=Staphylococcus epidermidis RepID=C5QXU0_STAEP
71_008_scaffold_110_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29111..29821)
DNA (711bp) protein (237aa)
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=76 Tax=Staphylococcus epidermidis RepID=Q5HNL2_STAEQ
alkaline phosphatase synthesis transcriptional regulatory protein; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:AAW54628.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
71_008_scaffold_110_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30246..31514)
DNA (1269bp) protein (423aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
isocitrate dehydrogenase (EC:1.1.1.41); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] n=1 Tax=Staphylococcus epidermidis NIHLM023 RepID=J1AA56_STAEP
71_008_scaffold_110_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31557..32678)
DNA (1122bp) protein (374aa)
gltA; citrate synthase (EC:2.3.3.5); K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=9 Tax=Staphylococcus epidermidis RepID=C5QXU3_STAEP
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
71_008_scaffold_110_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33026..34384
DNA (1359bp) protein (453aa)
Amino acid permease n=7 Tax=Staphylococcus epidermidis RepID=C5QXU4_STAEP
Amino acid permease {ECO:0000313|EMBL:EES35874.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
amino acid permease; K03293 amino acid transporter, AAT family
Displaying items 1-30 of 44 in total

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