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71_008_scaffold_187

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_187_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1..408)
DNA (408bp) protein (136aa)
ACT domain protein n=13 Tax=Staphylococcus epidermidis RepID=C5QWP7_STAEP
ACT domain protein {ECO:0000313|EMBL:EFE59426.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
ACT domain-containing protein
71_008_scaffold_187_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(562..1266)
DNA (705bp) protein (235aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EES36302.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EES36302.1};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
short chain dehydrogenase/reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Oxidoreductase, short chain dehydrogenase/reductase family protein n=8 Tax=Staphylococcus epidermidis RepID=C5QWP6_STAEP
71_008_scaffold_187_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1263..2552)
DNA (1290bp) protein (430aa)
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EES36301.1}; EC=3.4.24.- {ECO:0000313|EMBL:EES36301.1};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
Peptidase M16 inactive domain protein n=6 Tax=Staphylococcus epidermidis RepID=C5QWP5_STAEP
M16 family peptidase
71_008_scaffold_187_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2552..3823)
DNA (1272bp) protein (424aa)
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EES36300.1}; EC=3.4.24.- {ECO:0000313|EMBL:EES36300.1};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
Peptidase M16 inactive domain protein n=5 Tax=Staphylococcus epidermidis RepID=C5QWP4_STAEP
hypothetical protein
71_008_scaffold_187_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3853..4566)
DNA (714bp) protein (238aa)
UbiC transcription regulator-associated domain protein n=7 Tax=Staphylococcus epidermidis RepID=C5QWP3_STAEP
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EES36299.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
transcriptional regulator
71_008_scaffold_187_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4569..6962)
DNA (2394bp) protein (798aa)
FtsK/SpoIIIE family protein n=5 Tax=Staphylococcus epidermidis RepID=C5QWP2_STAEP
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:EES36298.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
71_008_scaffold_187_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7229..8935)
DNA (1707bp) protein (569aa)
hypothetical protein; K12574 ribonuclease J [EC:3.1.-.-]
Ribonuclease J {ECO:0000256|PIRNR:PIRNR004803}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR004803};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Ribonuclease J n=36 Tax=Staphylococcus epidermidis RepID=V4QRT5_STAEP
71_008_scaffold_187_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9272..11377)
DNA (2106bp) protein (702aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
polynucleotide phosphorylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=6 Tax=Staphylococcus epidermidis RepID=C5QWP0_STAEP
71_008_scaffold_187_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(11509..11778)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=75 Tax=Staphylococcus epidermidis RepID=RS15_STAEQ
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
71_008_scaffold_187_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11897..12868)
DNA (972bp) protein (324aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
ribF; riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin biosynthesis protein RibF n=3 Tax=Staphylococcus epidermidis RepID=C5QWN8_STAEP
71_008_scaffold_187_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12884..13801)
DNA (918bp) protein (306aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
truB; tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=7 Tax=Staphylococcus epidermidis RepID=C5QWN7_STAEP
71_008_scaffold_187_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13939..14307)
DNA (369bp) protein (123aa)
Ribosome-binding factor A n=31 Tax=Staphylococcus epidermidis RepID=C5QWN6_STAEP
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
71_008_scaffold_187_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14590..16752)
DNA (2163bp) protein (721aa)
Translation initiation factor IF-2 n=1 Tax=Staphylococcus epidermidis NIHLM023 RepID=J0QDB0_STAEP
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
71_008_scaffold_187_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16757..17074)
DNA (318bp) protein (106aa)
Ribosomal protein L7Ae n=21 Tax=Staphylococcus epidermidis RepID=H0DY94_STAEP
50S ribosomal protein L7 {ECO:0000313|EMBL:ESV19296.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
50S ribosomal protein L7
71_008_scaffold_187_15
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17074..17358)
DNA (285bp) protein (95aa)
Uncharacterized protein n=72 Tax=Staphylococcus epidermidis RepID=Q5HPS4_STAEQ
hypothetical protein; K07742 hypothetical protein
PF04296 family protein {ECO:0000313|EMBL:ETJ09094.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
71_008_scaffold_187_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17376..18599)
DNA (1224bp) protein (408aa)
Transcription termination factor NusA n=15 Tax=Staphylococcus epidermidis RepID=C5QWN2_STAEP
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A
71_008_scaffold_187_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18621..19088)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=13 Tax=Staphylococcus epidermidis RepID=C5QWN1_STAEP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
hypothetical protein; K09748 ribosome maturation factor RimP
71_008_scaffold_187_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19267..23577)
DNA (4311bp) protein (1437aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
polC; DNA polymerase III PolC (EC:2.7.7.7); K03763 DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
DNA polymerase III polC-type n=1 Tax=Staphylococcus epidermidis W23144 RepID=C5QWN0_STAEP
71_008_scaffold_187_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23827..25530)
DNA (1704bp) protein (568aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase n=2 Tax=Staphylococcus epidermidis RepID=C5QWM9_STAEP
71_008_scaffold_187_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25549..26835)
DNA (1287bp) protein (429aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
hypothetical protein; K11749 regulator of sigma E protease [EC:3.4.24.-]
RIP metalloprotease RseP n=20 Tax=Staphylococcus epidermidis RepID=C5QWM8_STAEP
71_008_scaffold_187_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27068..27850)
DNA (783bp) protein (261aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Phosphatidate cytidylyltransferase n=75 Tax=Staphylococcus epidermidis RepID=CDSA_STAEQ
71_008_scaffold_187_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27854..28624)
DNA (771bp) protein (257aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
uppS; undecaprenyl pyrophosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
Isoprenyl transferase n=4 Tax=Staphylococcus epidermidis RepID=C5QWM6_STAEP
71_008_scaffold_187_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28845..29399)
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=25 Tax=Staphylococcus epidermidis RepID=C5QWM5_STAEP
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
frr; ribosome recycling factor; K02838 ribosome recycling factor
71_008_scaffold_187_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29416..30138)
DNA (723bp) protein (241aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22]
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Uridylate kinase n=81 Tax=Staphylococcus RepID=PYRH_STAEQ
71_008_scaffold_187_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30279..31157)
DNA (879bp) protein (293aa)
Elongation factor Ts n=22 Tax=Staphylococcus epidermidis RepID=C5QWM3_STAEP
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
tsf; elongation factor Ts; K02357 elongation factor Ts
71_008_scaffold_187_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(31309..32097)
DNA (789bp) protein (263aa)
30S ribosomal protein S2 n=1 Tax=Staphylococcus epidermidis FRI909 RepID=E6JKX4_STAEP
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
71_008_scaffold_187_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(32455..33228)
DNA (774bp) protein (258aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=47 Tax=Staphylococcus epidermidis RepID=CODY_STAES
transcriptional repressor CodY; K03706 transcriptional pleiotropic repressor
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621, ECO:0000256|SAAS:SAAS00044533}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
71_008_scaffold_187_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33252..34655)
DNA (1404bp) protein (468aa)
ATP-dependent protease ATPase subunit HslU n=47 Tax=Staphylococcus epidermidis RepID=HSLU_STAEQ
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
71_008_scaffold_187_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(34725..35267)
DNA (543bp) protein (181aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248};; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
hslV; ATP-dependent protease peptidase subunit (EC:3.4.99.-); K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
ATP-dependent protease subunit HslV n=24 Tax=Staphylococcus epidermidis RepID=C5QWL8_STAEP
71_008_scaffold_187_30
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(35271..35609)
DNA (339bp) protein (113aa)
Tyrosine recombinase XerC n=1 Tax=Staphylococcus epidermidis NIHLM040 RepID=J0FPH3_STAEP
xerC protein; K03733 integrase/recombinase XerC
Tyrosine recombinase XerC {ECO:0000313|EMBL:ETJ14887.1}; Flags: Fragment;; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Displaying 30 items

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