ggKbase home page

71_012_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 181 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_012_scaffold_28_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183..524
DNA (342bp) protein (114aa)
Uncharacterized protein n=125 Tax=Enterobacteriaceae RepID=A7ZPK8_ECO24
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESP07809.1}; TaxID=1280986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 36 (4-5675286).;"
71_012_scaffold_28_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(515..1441)
DNA (927bp) protein (309aa)
Uncharacterized HTH-type transcriptional regulator YfeR n=529 Tax=Enterobacteriaceae RepID=YFER_ECOLI
LysR family transcriptional regulator
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:EMV57406.1}; TaxID=1116032 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2871950.;"
71_012_scaffold_28_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1531..2529
DNA (999bp) protein (333aa)
Sodium:bile acid symporter family protein n=735 Tax=Enterobacteriaceae RepID=B5YZV6_ECO5E
hypothetical protein
Sodium bile acid symporter family protein {ECO:0000313|EMBL:ESD73667.1}; TaxID=1268996 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908541.;"
71_012_scaffold_28_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2526..2744)
DNA (219bp) protein (73aa)
Putative cytoplasmic protein n=1 Tax=Escherichia coli M718 RepID=F4TH81_ECOLX
hypothetical protein; K09954 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAR13910.1}; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
71_012_scaffold_28_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2746..4761)
DNA (2016bp) protein (672aa)
ligA; NAD-dependent DNA ligase LigA (EC:6.5.1.2)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=749537 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 115-1.;"
DNA ligase n=338 Tax=Enterobacteriaceae RepID=DNLJ_ECO24
71_012_scaffold_28_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4832..5830)
DNA (999bp) protein (333aa)
Cell division protein ZipA homolog n=266 Tax=Enterobacteriaceae RepID=ZIPA_ECO5E
cell division protein ZipA
Cell division protein ZipA homolog {ECO:0000256|HAMAP-Rule:MF_00509, ECO:0000256|SAAS:SAAS00054614}; TaxID=701177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O55:H7 (strain CB9615 / EPEC).;"
71_012_scaffold_28_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6029..6790
DNA (762bp) protein (254aa)
Protein CysZ n=286 Tax=Enterobacteriaceae RepID=CYSZ_ECO55
cysZ; sulfate transport protein CysZ; K06203 CysZ protein
Sulfate transporter CysZ {ECO:0000256|HAMAP-Rule:MF_00468}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
71_012_scaffold_28_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6975..7946
DNA (972bp) protein (324aa)
cysK; cysteine synthase A; K01738 cysteine synthase A [EC:2.5.1.47]
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1182683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE76.;"
Cysteine synthase A n=1324 Tax=Enterobacteriaceae RepID=CYSK_ECO57
71_012_scaffold_28_9
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8330..8587
DNA (258bp) protein (86aa)
Phosphocarrier protein HPr n=2066 Tax=Enterobacteriaceae RepID=PTHP_ECO57
phosphotransferase system, phosphocarrier protein HPr; K02784 phosphocarrier protein HPr
Phosphocarrier protein ptsH {ECO:0000313|EMBL:ESG04270.1}; TaxID=1124962 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673.;"
71_012_scaffold_28_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8632..10359
DNA (1728bp) protein (576aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
phosphoenolpyruvate-protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9]
Phosphoenolpyruvate-protein phosphotransferase n=924 Tax=Enterobacteriaceae RepID=C3T127_ECOLX
71_012_scaffold_28_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10374..10883
DNA (510bp) protein (170aa)
crr; PTS system glucose-specific transporter; K02777 PTS system, glucose-specific IIA component [EC:2.7.1.69]
Glucose-specific phosphotransferase enzyme IIA component {ECO:0000313|EMBL:EYE02158.1}; EC=2.7.1.- {ECO:0000313|EMBL:EYE02158.1};; TaxID=1444215 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-110-08_S4_C1.;"
Glucose-specific phosphotransferase enzyme IIA component n=1358 Tax=Enterobacteriaceae RepID=PTGA_ECOL6
71_012_scaffold_28_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10925..11776)
DNA (852bp) protein (284aa)
pdxK; pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; K00868 pyridoxine kinase [EC:2.7.1.35]
Pyridoxine kinase {ECO:0000256|HAMAP-Rule:MF_01638}; EC=2.7.1.35 {ECO:0000256|HAMAP-Rule:MF_01638};; PN/PL/PM kinase {ECO:0000256|HAMAP-Rule:MF_01638}; Pyridoxal kinase {ECO:0000256|HAMAP-Rule:MF_01638}; Pyridoxamine kinase {ECO:0000256|HAMAP-Rule:MF_01638}; Vitamin B6 kinase {ECO:0000256|HAMAP-Rule:MF_01638}; TaxID=1165939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O111:H11 str. CVM9455.;"
Pyridoxine kinase n=179 Tax=Enterobacteriaceae RepID=PDXK_ECO24
71_012_scaffold_28_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11881..12249
DNA (369bp) protein (123aa)
Uncharacterized protein n=365 Tax=Enterobacteriaceae RepID=J7QG51_ECOLX
yfeK; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESD28959.1}; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
71_012_scaffold_28_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12252..13163)
DNA (912bp) protein (304aa)
cysM; cysteine synthase B; K12339 cysteine synthase B [EC:2.5.1.47]
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
Cysteine synthase B, O-acetylserine sulfhydrolase B n=259 Tax=Enterobacteriaceae RepID=J7R3M5_ECOLX
71_012_scaffold_28_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13297..14394)
DNA (1098bp) protein (366aa)
cysA; sulfate/thiosulfate transporter subunit (EC:3.6.3.25); K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25]
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=1268996 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908541.;"
Sulfate/thiosulfate ABC transporter, ATP-binding protein n=230 Tax=Enterobacteriaceae RepID=A7ZPM2_ECO24
71_012_scaffold_28_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14384..15259)
DNA (876bp) protein (292aa)
Sulfate transport system permease protein CysW n=857 Tax=Enterobacteriaceae RepID=CYSW_ECOL6
cysW; sulfate/thiosulfate transporter permease subunit; K02047 sulfate transport system permease protein
Sulfate transport system permease protein CysW {ECO:0000313|EMBL:EGP24276.1}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
71_012_scaffold_28_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15259..16092)
DNA (834bp) protein (278aa)
Sulfate transport system permease protein CysT n=543 Tax=Bacteria RepID=CYST_ECOLI
sulfate ABC transporter permease; K02046 sulfate transport system permease protein
Sulfate ABC transporter, permease protein CysT {ECO:0000313|EMBL:ESA78751.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
71_012_scaffold_28_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16092..17108)
DNA (1017bp) protein (339aa)
Thiosulfate-binding protein n=158 Tax=Escherichia RepID=CYSP_ECOLI
cysP; Thiosulfate-binding protein; K02048 sulfate transport system substrate-binding protein
Thiosulfate-binding protein {ECO:0000313|EMBL:KDZ36272.1}; TaxID=1444137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S3_C1.;"
71_012_scaffold_28_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17279..18070)
DNA (792bp) protein (264aa)
ucpA; short chain dehydrogenase (EC:1.-.-.-); K00540 [EC:1.-.-.-]
Oxidoreductase UcpA n=443 Tax=Enterobacteriaceae RepID=UCPA_ECOLI
Short-chain dehydrogenase {ECO:0000313|EMBL:KDV64287.1}; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O128:H2 str. 2011C-3317.;"
71_012_scaffold_28_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18199..19056)
DNA (858bp) protein (286aa)
HTH-type transcriptional regulator MurR n=7 Tax=Escherichia coli RepID=I4UM71_ECOLX
HTH-type transcriptional regulator MurR {ECO:0000256|HAMAP-Rule:MF_02108}; MurPQ operon repressor {ECO:0000256|HAMAP-Rule:MF_02108}; TaxID=1116139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.2.;"
yfeT; putative DNA-binding transcriptional regulator; K15835 RpiR family transcriptional regulator, murPQ operon repressor
71_012_scaffold_28_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19220..20116
DNA (897bp) protein (299aa)
RpiR family transcriptional regulator; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000256|HAMAP-Rule:MF_00068}; TaxID=1116135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; E
N-acetylmuramic acid 6-phosphate etherase n=293 Tax=Enterobacteriaceae RepID=MURQ_ECO24
71_012_scaffold_28_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20120..21544
DNA (1425bp) protein (475aa)
PTS system N-acetylmuramic acid-specific EIIBC component {ECO:0000313|EMBL:EMX48274.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EMX48274.1};; TaxID=1116139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.2.;"
PTS system N-acetylmuramic acid-specific EIIBC component n=1 Tax=Escherichia coli HVH 121 (4-6877826) RepID=T6XB12_ECOLX
murP; PTS system N-acetylmuramic acid transporter subunit IIBC
71_012_scaffold_28_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21549..22853
DNA (1305bp) protein (435aa)
UPF0214 protein YfeW n=297 Tax=Enterobacteriaceae RepID=J7QG58_ECOLX
yfeW; periplasmic esterase
UPF0214 protein YfeW {ECO:0000256|HAMAP-Rule:MF_01034}; Flags: Precursor;; TaxID=1446549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O118:H16 str. 2009C-4446.;"
71_012_scaffold_28_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22911..23810)
DNA (900bp) protein (300aa)
Uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=Q31Y49_SHIBS
yfeX; hypothetical protein; K07223 putative iron-dependent peroxidase
Peroxidase {ECO:0000313|EMBL:KDV64282.1}; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O128:H2 str. 2011C-3317.;"
71_012_scaffold_28_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23906..24481)
DNA (576bp) protein (192aa)
Uncharacterized protein n=426 Tax=Enterobacteriaceae RepID=C3T0V2_ECOLX
yfeY; hypothetical protein
RpoE-regulated lipoprotein {ECO:0000313|EMBL:AFS73356.1}; TaxID=1133852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O104:H4 (strain 2011C-3493).;"
71_012_scaffold_28_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24542..24991)
DNA (450bp) protein (150aa)
Uncharacterized protein n=128 Tax=Escherichia coli RepID=B2N407_ECOLX
yfeZ; inner membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EFK26887.1}; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 187-1.;"
71_012_scaffold_28_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24978..25403)
DNA (426bp) protein (142aa)
Acetyltransferase YpeA {ECO:0000256|HAMAP-Rule:MF_01127}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01127};; TaxID=1116135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.12.;"
UPI00005E351D related cluster n=1 Tax=unknown RepID=UPI00005E351D
putative acetyltransferase
71_012_scaffold_28_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25617..26486
DNA (870bp) protein (290aa)
amiA; N-acetylmuramoyl-l-alanine amidase I; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EFK88620.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EFK88620.1};; TaxID=749540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 146-1.;"
N-acetylmuramoyl-L-alanine amidase AmiA n=199 Tax=Enterobacteriaceae RepID=AMIA_ECOLI
71_012_scaffold_28_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26490..27389
DNA (900bp) protein (300aa)
hemF; coproporphyrinogen III oxidase (EC:1.3.3.3); K00228 coproporphyrinogen III oxidase [EC:1.3.3.3]
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=1446580 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O123:H11 str. 2009C-3307.;"
Coproporphyrinogen-III oxidase, aerobic n=310 Tax=Enterobacteriaceae RepID=HEM6_ECO24
71_012_scaffold_28_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27395..28447)
DNA (1053bp) protein (351aa)
Predicted DNA-binding transcriptional regulator, ARAC-type n=282 Tax=Enterobacteriaceae RepID=C8U7W6_ECO10
transcriptional regulator EutR; K04033 AraC family transcriptional regulator, ethanolamine operon transcriptional activator
Putative DNA-binding transcriptional regulator {ECO:0000313|EMBL:CEK06149.1}; TaxID=244319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O26:H11.;"
Displaying items 1-30 of 181 in total

View Taxonomy