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71_012_scaffold_177

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_012_scaffold_177_1
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..422)
DNA (420bp) protein (140aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
DNA gyrase subunit A n=4 Tax=Bifidobacterium dentium RepID=D2Q6I3_BIFDB
71_012_scaffold_177_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(448..2544)
DNA (2097bp) protein (699aa)
DNA gyrase subunit B {ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|RuleBase:RU003363};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
gyrB; DNA gyrase (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=2 Tax=Bifidobacterium dentium RepID=D2Q6I2_BIFDB
71_012_scaffold_177_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2776..3261)
DNA (486bp) protein (162aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S8L9_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFM40904.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
71_012_scaffold_177_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3261..4451)
DNA (1191bp) protein (397aa)
DNA replication and repair protein RecF n=2 Tax=Bifidobacterium dentium RepID=D2Q6I0_BIFDB
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
recF; Recombinational DNA repair ATPase RecF; K03629 DNA replication and repair protein RecF
71_012_scaffold_177_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4536..5660)
DNA (1125bp) protein (375aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
DNA polymerase III, subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=2 Tax=Bifidobacterium dentium RepID=E0Q9I3_9BIFI
71_012_scaffold_177_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6135..7637)
DNA (1503bp) protein (501aa)
Chromosomal replication initiator protein DnaA n=3 Tax=Bifidobacterium dentium RepID=B1S8M2_9BIFI
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
dnaA; chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein
71_012_scaffold_177_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


7954..8088
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=3 Tax=Bifidobacterium dentium RepID=D2Q826_BIFDB
rpmH; 50S ribosomal protein L34P; K02914 large subunit ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
71_012_scaffold_177_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8791..9801
DNA (1011bp) protein (337aa)
Membrane protein insertase, YidC/Oxa1 family n=2 Tax=Bifidobacterium dentium RepID=E0Q9I7_9BIFI
60Kd inner membrane protein {ECO:0000313|EMBL:ETO94981.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
yidC; YidC Inner membrane protein (Preprotein translocase subunit YidC); K03217 preprotein translocase subunit YidC
71_012_scaffold_177_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9921..10466
DNA (546bp) protein (182aa)
R3H domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9I8_9BIFI
R3H domain protein {ECO:0000313|EMBL:ETO94985.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
jag; Jag protein; K06346 spoIIIJ-associated protein
71_012_scaffold_177_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10664..11413
DNA (750bp) protein (250aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
gidB; methyltransferase gidB (Glucose inhibited division protein B); K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G n=2 Tax=Bifidobacterium dentium RepID=E0Q9I9_9BIFI
71_012_scaffold_177_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11646..12626
DNA (981bp) protein (327aa)
parA; chromosome partitioning protein PrA (EC:1.18.6.1); K03496 chromosome partitioning protein
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9J0_9BIFI
YhjQ protein {ECO:0000313|EMBL:ETO94980.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_012_scaffold_177_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12629..13936
DNA (1308bp) protein (436aa)
ParB-like protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9J1_9BIFI
ParB/RepB/Spo0J family partition protein {ECO:0000313|EMBL:ETO94958.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family
71_012_scaffold_177_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14131..15063)
DNA (933bp) protein (311aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
trxB2; trxB2 Thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=2 Tax=Bifidobacterium dentium RepID=E0Q9J2_9BIFI
71_012_scaffold_177_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15244..16977)
DNA (1734bp) protein (578aa)
ilvB; acetolactate synthase large subunit (EC:1.2.3.3); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9J3_9BIFI
Acetolactate synthase {ECO:0000313|EMBL:ETO95010.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
71_012_scaffold_177_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17123..20839)
DNA (3717bp) protein (1239aa)
Integral membrane protein MviN n=2 Tax=Bifidobacterium dentium RepID=E0Q9J4_9BIFI
Putative murein biosynthesis integral membrane protein MurJ {ECO:0000313|EMBL:ETO94969.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
mviN; integral membrane protein MviN; K03980 virulence factor
71_012_scaffold_177_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20836..22977)
DNA (2142bp) protein (714aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8N3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO95012.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_012_scaffold_177_17
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22941..23636)
DNA (696bp) protein (232aa)
phosphohydrolase (EC:3.6.1.13)
Phosphohydrolase (MutT/nudix family protein) n=4 Tax=Bifidobacterium dentium RepID=D2Q815_BIFDB
Phosphohydrolase {ECO:0000313|EMBL:ETY70448.1}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
71_012_scaffold_177_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23714..25303
DNA (1590bp) protein (530aa)
CCA tRNA nucleotidyltransferase {ECO:0000313|EMBL:ETO95011.1}; EC=2.7.7.72 {ECO:0000313|EMBL:ETO95011.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
pcnA; RNA nucleotidyltransferase; K00970 poly(A) polymerase [EC:2.7.7.19]
tRNA adenylyltransferase n=2 Tax=Bifidobacterium dentium RepID=E1NAZ7_9BIFI
71_012_scaffold_177_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25366..26004)
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9J8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO94979.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_012_scaffold_177_20
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26049..26948)
DNA (900bp) protein (300aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
spE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=2 Tax=Bifidobacterium dentium RepID=E0Q9J9_9BIFI
71_012_scaffold_177_21
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(26945..27895)
DNA (951bp) protein (317aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1150423 species="Bacteria; Actinobacteri
ksgA; dimethyladenosine transferase (EC:2.1.1.48); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Bifidobacterium dentium RepID=E0Q9K0_9BIFI
71_012_scaffold_177_22
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27895..29310)
DNA (1416bp) protein (472aa)
G5 domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9K1_9BIFI
G5 domain protein {ECO:0000313|EMBL:ETO94959.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
71_012_scaffold_177_trna_1
unknown

Not on your lists

comp(29617..29690)
DNA (74bp)
transferRNA Thr
71_012_scaffold_177_23
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29807..30787)
DNA (981bp) protein (327aa)
protein-disulfide isomerase (EC:2.7.11.1)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9K2_9BIFI
Thioredoxin {ECO:0000313|EMBL:ETO94966.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Displaying 24 items

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