ggKbase home page

71_013_scaffold_21

Search features with annotation key words

Displaying items 1-30 of 89 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_013_scaffold_21_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..969
DNA (969bp) protein (323aa)
ABC transporter ATP-binding protein/permease (EC:3.6.3.44); K06147 ATP-binding cassette, subfamily B, bacterial
ATP-binding and permease protein of ABC transporter system n=2 Tax=Bifidobacterium dentium RepID=D2Q7B3_BIFDB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32512.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_21_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1070..3103
DNA (2034bp) protein (678aa)
ABC-type multidrug transport system ATPase and permease component n=13 Tax=Bifidobacterium RepID=B3DPC6_BIFLD
ABC transporter permease; K06147 ATP-binding cassette, subfamily B, bacterial
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESV34364.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
71_013_scaffold_21_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3106..5325
DNA (2220bp) protein (740aa)
alpha-galactosidase (EC:3.2.1.22); K07407 alpha-galactosidase [EC:3.2.1.22]
Alpha-galactosidase n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FEP5_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32510.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_21_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5534..7690
DNA (2157bp) protein (719aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G7S2_BIFLO
Uncharacterized protein {ECO:0000313|EMBL:KFI90061.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein; K09955 hypothetical protein
71_013_scaffold_21_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7973..8827
DNA (855bp) protein (285aa)
DNA-binding helix-turn-helix protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AWE3_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32508.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative AraC family DNA-binding protein
71_013_scaffold_21_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9067..9822
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4IJQ3_BIFAP
Uncharacterized protein {ECO:0000313|EMBL:KFI90059.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_013_scaffold_21_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10018..10737
DNA (720bp) protein (240aa)
Drug resistance transporter EmrB/QacA subfamily n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NZE1_9BIFI
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:KFI90058.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_013_scaffold_21_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10982..14143
DNA (3162bp) protein (1054aa)
Putative rhamnosidase n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4INK5_BIFAP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32505.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative rhamnosidase
71_013_scaffold_21_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14205..15290
DNA (1086bp) protein (362aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium dentium RepID=E0Q6L8_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32504.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
LacI family transcriptional regulator
71_013_scaffold_21_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15373..16419)
DNA (1047bp) protein (349aa)
Transcriptional regulator LacI family n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H361_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32503.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
LacI-type transcriptional regulator
71_013_scaffold_21_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16775..18388
DNA (1614bp) protein (538aa)
ABC transporter, solute-binding protein n=2 Tax=Bifidobacterium dentium RepID=E0QAF7_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32501.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
71_013_scaffold_21_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18494..19471
DNA (978bp) protein (326aa)
sugar ABC transporter permease n=1 Tax=Scardovia inopinata RepID=UPI0001D09C3B
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32500.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein
71_013_scaffold_21_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19484..20449
DNA (966bp) protein (322aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium dentium RepID=E0QAF9_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32499.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
binding-protein-dependent transporter inner membrane component; K02026 multiple sugar transport system permease protein
71_013_scaffold_21_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20615..21703
DNA (1089bp) protein (363aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZWT4_BIFLJ
Endo-1,4-beta-xylanase {ECO:0000313|EMBL:KFI90051.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_013_scaffold_21_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21754..22893
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B3C748
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32497.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Ig-like domain-containing protein
71_013_scaffold_21_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23102..25243
DNA (2142bp) protein (714aa)
Family 31 glucosidase {ECO:0000313|EMBL:KFI90049.1}; EC=3.2.1.177 {ECO:0000313|EMBL:KFI90049.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
glycosyl hydrolase (EC:3.2.1.3); K01811 alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
Glycosyl hydrolase, family 31 n=2 Tax=Bifidobacterium dentium RepID=E0Q6L9_9BIFI
71_013_scaffold_21_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25415..26560
DNA (1146bp) protein (382aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium dentium RepID=E0Q6L8_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32495.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
LacI family transcriptional regulator
71_013_scaffold_21_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26586..28664)
DNA (2079bp) protein (693aa)
beta-galactosidase (EC:3.2.1.23); K12308 beta-galactosidase [EC:3.2.1.23]
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
Beta-galactosidase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GNW4_BIFLS
71_013_scaffold_21_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28821..29867
DNA (1047bp) protein (349aa)
Putative transcriptional regulator n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GNW3_BIFLS
putative transcriptional regulator
Regulatory protein, LacI {ECO:0000313|EMBL:ACJ53469.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
71_013_scaffold_21_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30143..31393
DNA (1251bp) protein (417aa)
ABC transporter, solute-binding protein n=2 Tax=Bifidobacterium breve RepID=F6C8J0_BIFBA
ABC transporter substrate-binding protein; K02027 multiple sugar transport system substrate-binding protein
Extracellular solute-binding protein, family 1 {ECO:0000313|EMBL:ACJ53468.1}; Flags: Precursor;; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
71_013_scaffold_21_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31546..32502
DNA (957bp) protein (319aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZWU8_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32485.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
binding-protein-dependent transporter inner membrane component; K02025 multiple sugar transport system permease protein
71_013_scaffold_21_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32506..33378
DNA (873bp) protein (291aa)
Binding-protein-dependent transport systems inner membrane component n=3 Tax=Bifidobacterium RepID=B7GNW0_BIFLS
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:KFI90036.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ABC transporter permease; K02026 multiple sugar transport system permease protein
71_013_scaffold_21_23
unknown

Not on your lists

comp(33249..33500)
DNA (252bp) protein (84aa)

This feature has no annotations

71_013_scaffold_21_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33506..34474
DNA (969bp) protein (323aa)
Family 43 glycoside hydrolase {ECO:0000313|EMBL:KFI90035.1}; EC=3.2.1.37 {ECO:0000313|EMBL:KFI90035.1};; EC=3.2.1.55 {ECO:0000313|EMBL:KFI90035.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Glycoside hydrolase, family 43 n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZWU6_BIFLJ
family 43 glycoside hydrolase
71_013_scaffold_21_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34584..35540
DNA (957bp) protein (319aa)
Hydrolase, TatD family n=3 Tax=Bifidobacterium bifidum RepID=E4VB14_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32481.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
tadD; sec-independent protein
71_013_scaffold_21_26
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35824..38334
DNA (2511bp) protein (837aa)
Probable potassium transport system protein kup n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LDU6_BIFBI
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
K+ transporter; K03549 KUP system potassium uptake protein
71_013_scaffold_21_27
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38405..39274
DNA (870bp) protein (290aa)
Putative uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=E3EQP1_BIFBS
Glutamine amidotransferase {ECO:0000313|EMBL:KFI95633.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_013_scaffold_21_28
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39323..40018
DNA (696bp) protein (232aa)
Metal dependent phosphohydrolase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GNU4_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32478.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
metal dependent phosphohydrolase; K06950 uncharacterized protein
71_013_scaffold_21_29
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40219..41367)
DNA (1149bp) protein (383aa)
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFI95631.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KFI95631.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CE10_BIFBI
ABC transporter ATP-binding protein
71_013_scaffold_21_30
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41364..42704)
DNA (1341bp) protein (447aa)
SalY-type ABC antimicrobial peptide transportsystem permease component n=2 Tax=Bifidobacterium bifidum RepID=K2I864_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32476.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
Displaying items 1-30 of 89 in total

View Taxonomy