ggKbase home page

71_013_scaffold_39

Search features with annotation key words

Displaying items 1-30 of 67 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_013_scaffold_39_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..828)
DNA (828bp) protein (276aa)
Transcriptional regulator LysR family n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H6T4_9BIFI
LysR family transcriptional regulator {ECO:0000313|EMBL:KFI91997.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
LysR family transcriptional regulator
71_013_scaffold_39_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(907..1998)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1Z3N5_9CLOT
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31362.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
aminotransferase
71_013_scaffold_39_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2221..2985)
DNA (765bp) protein (255aa)
arginine ABC transporter ATP-binding protein n=1 Tax=Actinomyces vaccimaxillae RepID=UPI0003B48879
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31363.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter
71_013_scaffold_39_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3030..3707)
DNA (678bp) protein (226aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Isoptericola variabilis (strain 225) RepID=F6FRQ5_ISOV2
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31364.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
polar amino acid ABC transporter inner membrane subunit; K10009 cystine transport system permease protein
71_013_scaffold_39_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3785..4672)
DNA (888bp) protein (296aa)
Cystine ABC transporter cystine-binding protein n=1 Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QR32_ARTGO
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31365.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
extracellular solute-binding protein; K02424 cystine transport system substrate-binding protein
71_013_scaffold_39_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5008..6036
DNA (1029bp) protein (343aa)
Teicoplanin resistance protein n=2 Tax=Bifidobacterium bifidum RepID=I3WIC1_BIFBI
Teicoplanin resistance protein {ECO:0000313|EMBL:KFI92002.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
vanZ; teicoplanin resistance protein
71_013_scaffold_39_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6178..8094
DNA (1917bp) protein (639aa)
ABC transporter {ECO:0000313|EMBL:KFI92003.1}; EC=3.6.3.44 {ECO:0000313|EMBL:KFI92003.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ATP-binding cassette, subfamily B, bacterial n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJZ5_9FIRM
ABC-type multidrug transport system, ATPase and permease components
71_013_scaffold_39_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8094..10031
DNA (1938bp) protein (646aa)
ATP-binding cassette, subfamily B, bacterial n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MKU5_9FIRM
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31368.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC-type multidrug transport system, ATPase and permease components
71_013_scaffold_39_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10028..10657)
DNA (630bp) protein (210aa)
Hydrolase n=16 Tax=Bifidobacterium RepID=F8AQJ0_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31369.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
had superfamily hydrolase
71_013_scaffold_39_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10730..12592)
DNA (1863bp) protein (621aa)
Sugar kinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLH9_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31370.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
sugar kinase
71_013_scaffold_39_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12713..13315
DNA (603bp) protein (201aa)
nqo; ribosyldihydronicotinamide dehydrogenase (EC:1.10.99.2)
NAD(P)H oxidoreductase n=6 Tax=Bifidobacterium RepID=E4NXA3_BIFBP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31371.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_39_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13869..14540
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y0F0_BIFBU
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31372.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_39_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14730..15128)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPB8_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31373.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_39_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15212..15598)
DNA (387bp) protein (129aa)
methyltransferase n=1 Tax=Bifidobacterium breve RepID=UPI0002D4F4B8
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31374.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
methyltransferase domain protein
71_013_scaffold_39_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15816..16118)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZKR9_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31376.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_39_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16319..16774
DNA (456bp) protein (152aa)
Transcriptional regulator, MerR family n=4 Tax=Bifidobacterium dentium RepID=D2QAA7_BIFDB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31377.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
MerR family transcriptional regulator
71_013_scaffold_39_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16835..17596
DNA (762bp) protein (254aa)
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
Carboxymuconolactone decarboxylase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCM8_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31378.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_39_18
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17956..18276
DNA (321bp) protein (107aa)
Transcriptional regulator, ArsR family n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4IL83_BIFAP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31379.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional regulator, ArsR family
71_013_scaffold_39_19
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18494..19627)
DNA (1134bp) protein (378aa)
Methionine synthase, vitamin-B12 independent n=2 Tax=Bifidobacterium RepID=C0BTE5_9BIFI
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000313|EMBL:KFI91071.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
yxjG_1; hypothetical protein
71_013_scaffold_39_20
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19858..21285
DNA (1428bp) protein (476aa)
Udp-glucose pyrophosphorylase {ECO:0000313|EMBL:KFI91070.1}; EC=2.7.7.9 {ECO:0000313|EMBL:KFI91070.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
udp-glucose pyrophosphorylase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UDP-glucose pyrophosphorylase n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R362_BIFLM
71_013_scaffold_39_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21440..23374
DNA (1935bp) protein (645aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUE0_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31382.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_39_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23405..23716
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GXC1_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31383.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_39_23
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23799..26381
DNA (2583bp) protein (861aa)
DEAD/DEAH box helicase domain-containing protein; K03727 ATP-dependent RNA helicase HelY [EC:3.6.4.-]
DEAD/DEAH box helicase domain protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUD8_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31384.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_39_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26531..26878
DNA (348bp) protein (116aa)
RNA polymerase-binding protein RbpA n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZUD7_BIFLJ
RNA polymerase-binding protein RbpA {ECO:0000256|HAMAP-Rule:MF_01483}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_013_scaffold_39_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27051..27770
DNA (720bp) protein (240aa)
Phosphoglycolate phosphatase {ECO:0000313|EMBL:KFI91065.1}; EC=3.1.3.5 {ECO:0000313|EMBL:KFI91065.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
gph; phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase n=6 Tax=Bifidobacterium RepID=E3EP27_BIFBS
71_013_scaffold_39_26
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28462..29475)
DNA (1014bp) protein (338aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium breve RepID=F9XZB3_BIFBU
Transcriptional regulator, LacI family {ECO:0000313|EMBL:KFI91064.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Transcriptional regulator, LacI family
71_013_scaffold_39_27
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29595..30374)
DNA (780bp) protein (260aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=U2DYY3_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31389.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Hypothetical protein
71_013_scaffold_39_28
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30416..32512)
DNA (2097bp) protein (699aa)
Beta-galactosidase {ECO:0000313|EMBL:KFI91062.1}; EC=3.2.1.23 {ECO:0000313|EMBL:KFI91062.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
lacZ8; Beta-galactosidase (EC:3.2.1.23)
Putative bacteriochlorophyll 4-vinyl reductase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CS83_BIFBR
71_013_scaffold_39_29
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32549..33544)
DNA (996bp) protein (332aa)
ABC sugar transport system, permease protein n=2 Tax=Bifidobacterium breve RepID=F9XZB6_BIFBU
ABC sugar transport system, permease protein {ECO:0000313|EMBL:KFI91061.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ABC sugar transport system, permease protein
71_013_scaffold_39_30
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33492..35057)
DNA (1566bp) protein (522aa)
ABC sugar transport system, ATP-binding protein {ECO:0000313|EMBL:KFI91060.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KFI91060.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ABC sugar transport system, ATP-binding protein n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZB7_BIFBU
ABC sugar transport system, ATP-binding protein
Displaying items 1-30 of 67 in total

View Taxonomy