ggKbase home page

71_013_scaffold_1021

Search features with annotation key words

Displaying 6 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_013_scaffold_1021_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


2..433
DNA (432bp) protein (144aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Alanine--tRNA ligase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVS8_BIFBI
71_013_scaffold_1021_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

463..900
DNA (438bp) protein (146aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
endonuclease involved in recombination; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LYQ8_BIFBI
71_013_scaffold_1021_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

912..2099
DNA (1188bp) protein (396aa)
Aminodeoxychorismate lyase n=3 Tax=Bifidobacterium bifidum RepID=E3EM32_BIFBS
hypothetical protein; K07082 UPF0755 protein
Uncharacterized protein {ECO:0000313|EMBL:EKF14947.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_013_scaffold_1021_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2096..2566)
DNA (471bp) protein (157aa)
hypothetical protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
Conserved hypothetical membrane spanning protein n=2 Tax=Bifidobacterium RepID=E3EM33_BIFBS
Putative peptidase A24A, prepilin type IV {ECO:0000313|EMBL:KFI42868.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_013_scaffold_1021_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2613..3806
DNA (1194bp) protein (398aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Chorismate synthase n=5 Tax=Bifidobacterium bifidum RepID=E3EM34_BIFBS
71_013_scaffold_1021_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3864..4187
DNA (324bp) protein (108aa)
aroB; shikimate kinase/3-dehydroquinate synthase AroB (EC:2.7.1.71); K13829 shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
Bifunctional shikimate kinase/3-dehydroquinate synthase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVT7_BIFBI
Shikimate kinase/3-dehydroquinate synthase {ECO:0000313|EMBL:ADO53042.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying 6 items

View Taxonomy