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71_013_scaffold_383

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Displaying 15 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_013_scaffold_383_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..134)
DNA (132bp) protein (44aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B47224
Uncharacterized protein {ECO:0000313|EMBL:ETI83578.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
71_013_scaffold_383_2
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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329..514
DNA (186bp) protein (62aa)
50S ribosomal protein L28 n=1 Tax=Gordonia kroppenstedtii RepID=UPI00036A9CB9
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1265868 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rimosus subsp. rimosus ATCC 10970.;"
rpmB; 50S ribosomal protein L28
71_013_scaffold_383_3
Bifidobacterium psychraerophilum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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654..1226
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B6F9A1
TM2 domain protein {ECO:0000313|EMBL:KFI84844.1}; TaxID=218140 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium psychraerophilum.;"
TM2 domain protein
71_013_scaffold_383_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1517..2212
DNA (696bp) protein (232aa)
translation initiation factor IF-3 n=1 Tax=Varibaculum cambriense RepID=UPI0003B42125
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
translation initiation factor IF-3
71_013_scaffold_383_5
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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2275..2475
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=1 Tax=Varibaculum cambriense RepID=UPI0003B64F1F
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
71_013_scaffold_383_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


2497..2877
DNA (381bp) protein (127aa)
50S ribosomal protein L20 n=1 Tax=Varibaculum cambriense RepID=UPI0003B7B201
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
71_013_scaffold_383_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2902..3732
DNA (831bp) protein (277aa)
RNA methyltransferase n=1 Tax=Varibaculum cambriense RepID=UPI0003B66DD0
Putative RNA methyltransferase {ECO:0000313|EMBL:ETI83581.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
TrmH family rRNA methyltransferase; K03437 RNA methyltransferase, TrmH family
71_013_scaffold_383_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3757..4158)
DNA (402bp) protein (134aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B4BB88
Transcriptional regulator, Fur family {ECO:0000313|EMBL:ETI83586.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
FUR family transcriptional regulator
71_013_scaffold_383_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4189..5142)
DNA (954bp) protein (318aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III subunit delta n=1 Tax=Varibaculum cambriense RepID=UPI0003B75DC0
DNA polymerase III, delta subunit {ECO:0000313|EMBL:ETI83587.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
71_013_scaffold_383_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5139..6767)
DNA (1629bp) protein (543aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B355EF
Uncharacterized protein {ECO:0000313|EMBL:ETI83588.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
71_013_scaffold_383_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6775..7548)
DNA (774bp) protein (258aa)
competence protein ComEA n=1 Tax=Varibaculum cambriense RepID=UPI0003B345DC
Uncharacterized protein {ECO:0000313|EMBL:ETI83589.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
competence protein ComEA; K02237 competence protein ComEA
71_013_scaffold_383_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7644..8564)
DNA (921bp) protein (307aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
RluA family pseudouridine synthase (EC:3.2.1.17); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
RNA pseudouridine synthase n=1 Tax=Varibaculum cambriense RepID=UPI0003B3E5CB
71_013_scaffold_383_13
Actinomyces sp. oral taxon 171, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8557..9099)
DNA (543bp) protein (181aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=706439 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces sp. oral taxon 171 str. F0337.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
signal peptidase n=1 Tax=Varibaculum cambriense RepID=UPI0003B39847
71_013_scaffold_383_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9224..10024)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B3517F
DivIVA family protein {ECO:0000313|EMBL:ETI83592.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DivIVA family protein
71_013_scaffold_383_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10207..10335)
DNA (129bp) protein (43aa)
membrane protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B5386C
Uncharacterized protein {ECO:0000313|EMBL:ETI83593.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Displaying 15 items

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