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71_013_scaffold_559

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_013_scaffold_559_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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3..659
DNA (657bp) protein (219aa)
DNA processing protein DprA n=1 Tax=Varibaculum cambriense RepID=UPI0003B4F7F1
DNA protecting protein DprA {ECO:0000313|EMBL:ETI83511.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
71_013_scaffold_559_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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662..1573
DNA (912bp) protein (304aa)
tyrosine recombinase XerC n=1 Tax=Varibaculum cambriense RepID=UPI0003B459A3
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
xerC; site-specific tyrosine recombinase XerC; K03733 integrase/recombinase XerC
71_013_scaffold_559_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1727..2269)
DNA (543bp) protein (181aa)
peptidase M23 n=1 Tax=Varibaculum cambriense RepID=UPI0003B38966
Putative peptidase M23B {ECO:0000313|EMBL:ETI83509.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
peptidase m23
71_013_scaffold_559_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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2689..3570
DNA (882bp) protein (294aa)
30S ribosomal protein S2 n=1 Tax=Varibaculum cambriense RepID=UPI0003B7B932
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
71_013_scaffold_559_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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3605..4441
DNA (837bp) protein (279aa)
elongation factor Ts n=1 Tax=Varibaculum cambriense RepID=UPI0003B6C933
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
tsf; elongation factor EF1B; K02357 elongation factor Ts
71_013_scaffold_559_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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4628..5362
DNA (735bp) protein (245aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22]
uridylate kinase n=1 Tax=Varibaculum cambriense RepID=UPI0003B770DB
71_013_scaffold_559_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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5367..5924
DNA (558bp) protein (186aa)
ribosome recycling factor n=1 Tax=Varibaculum cambriense RepID=UPI0003B78627
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ribosome recycling factor; K02838 ribosome recycling factor
71_013_scaffold_559_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5925..6815
DNA (891bp) protein (297aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
phosphatidate cytidylyltransferase n=1 Tax=Varibaculum cambriense RepID=UPI0003B2F573
71_013_scaffold_559_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6832..7056
DNA (225bp) protein (75aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}
UPI0003D687FD related cluster n=1 Tax=unknown RepID=UPI0003D687FD
Displaying 9 items

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