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71_013_scaffold_652_3

Organism: 71_013_Varibaculum_cambriense_54_7

near complete RP 51 / 55 BSCG 51 / 51 MC: 4 ASCG 13 / 38 MC: 2
Location: comp(563..1594)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.3
  • Coverage: 347.0
  • Bit_score: 478
  • Evalue 1.00e-131
putative tRNA-pseudouridine synthase I (EC:5.4.99.12); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] similarity KEGG
DB: KEGG
  • Identity: 44.0
  • Coverage: 316.0
  • Bit_score: 241
  • Evalue 4.60e-61
tRNA pseudouridine synthase B n=1 Tax=Varibaculum cambriense RepID=UPI0003B57379 similarity UNIREF
DB: UNIREF100
  • Identity: 76.4
  • Coverage: 347.0
  • Bit_score: 532
  • Evalue 4.20e-148

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Taxonomy

Varibaculum cambriense → Varibaculum → Actinomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1032
ATGGACACTGCCAAAGACGCGCCCGATTTTGCTCCCGCAGGCGCTGAGCTTCCGGTTCCGCGTGCGCAAACAACCGCTCCTGATGGGGTATTGGCGGTAGATAAACCCCTAGGGGTAACCAGTCATGATGTAGTGGCGCGTCTGCGCCGCTTGGCGGCTACCCGCAAAGTGGGGCACGCCGGCACCCTAGATCCGGCGGCCTCGGGAGTGTTAGTAGCCGGTATCGGACGGGGAACGAAACTGCTGCAATACATGCAAGGACAGAAAAAAACTTATGTCACTCGGGTATGTTTCGGGGTGGAAACCGATAGTGAGGACGCCGAAGGCACGGTCACCGCGAGGCGCGGGGCTAGCCTAGACGACCTGGAGAATCTGGAGAGCATACTGCCGGCGTGGCGCGGGCCAGTAATGCAAGTGCCAAGCGCATTTTCCGCCTTGAAAATTCGCGGGCGGCGGGCGGCCGACCGGATTCGAGCCGGTGAAGAAATACACATGGAACCCCGACCGATTACTATCTATGAACTGGTCGCTCTGGGGGCGCCGCAAGCGGGAGAACTCGCTGGGGTAGGGGTGGTTTATCAAGATCTCAGAGTTACCTGTTCGGCGGGTACCTATATTCGCGCCCTCGGTCGAGATTTAGGGAATCAGCTGGGAGTGGGGGCGCATCTAGTAGCACTGCGCCGCCTAGCGGTCGGTGCCTTTACTGCCAGCGAGGATGTTAGCTCCAACGCGCCCTTTTGCGCCTATAATCTGGGGGAACTGGCGGAAATAATCAGCTCCGGCCACGAACTGCCGCTGGTGAGCCTCGATAAAATCTGTGGGGAACTGTTCCCCAGCTGCCCGGTGACCCCGGAAATAATCACCGCCCTAGGTTACGGTCAGCGCCCCGAAATTGCCGCTGAACTGGGCGAAGGAGTCCCGGGGGAGCCCGCAAAAATTTATGGACTGCATCTGCCCGGTAAAGAAATATCGCTATTGGCGTCGCCGGTGGAAGGCAAATGGCGATCTGTACTAAGTTTACAAAGTAGGTAA
PROTEIN sequence
Length: 344
MDTAKDAPDFAPAGAELPVPRAQTTAPDGVLAVDKPLGVTSHDVVARLRRLAATRKVGHAGTLDPAASGVLVAGIGRGTKLLQYMQGQKKTYVTRVCFGVETDSEDAEGTVTARRGASLDDLENLESILPAWRGPVMQVPSAFSALKIRGRRAADRIRAGEEIHMEPRPITIYELVALGAPQAGELAGVGVVYQDLRVTCSAGTYIRALGRDLGNQLGVGAHLVALRRLAVGAFTASEDVSSNAPFCAYNLGELAEIISSGHELPLVSLDKICGELFPSCPVTPEIITALGYGQRPEIAAELGEGVPGEPAKIYGLHLPGKEISLLASPVEGKWRSVLSLQSR*