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ALUMROCK_MS11_Chromatiales_related_55_29_curated

ALUMROCK_MS11_Gammaproteobacteria_55_1
In projects: ALUMROCK_MS11  |  alumrock-genomes

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: ALUMROCK_MS11_Chromatiales_related_55_29 Manually curated genome
Original version: ALUMROCK_MS11_Chromatiales_related_55_29

Properties

Avg. coverage: 1.00 Longest contig: 30.68 Kbp Bin length: 1.63 Mbp GC content: 54.70 %
Contigs count: 453 Features count: 2011 rRNAs count: 0 tRNAs count: 17

Genome completeness

near complete RP 51 / 55 MC: 3 BSCG 49 / 51 MC: 3 ASCG 10 / 38 MC: 3
Displaying items 201-250 of 453 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ar11r2_scaffold_18815
Species: Halothiobacillus neapolitanus (50%)
2 2173 bp 54.81 1.00 89.19
ar11r2_scaffold_28593
Species: Thiorhodospira sibirica (50%)
2 1426 bp 49.16 1.00 89.20
ar11r2_scaffold_15954
Class: Gammaproteobacteria (66.67%)
3 2184 bp 55.77 1.00 89.29
ar11r2_scaffold_7364
Phylum: Proteobacteria (50%)
6 6058 bp 55.40 1.00 89.29
ar11r2_scaffold_28129
Species: mine drainage metagenome (50%)
4 1572 bp 54.83 1.00 89.31
ar11r2_scaffold_31174
Phylum: Proteobacteria (100%)
3 1555 bp 54.73 1.00 89.32
ar11r2_scaffold_1513
Class: Gammaproteobacteria (50%)
8 8073 bp 56.06 1.00 89.33
ar11r2_scaffold_5407
Genus: Pseudomonas (60%)
5 4162 bp 53.94 1.00 89.38
ar11r2_scaffold_1280
Species: Thiothrix nivea (66.67%)
12 8824 bp 54.85 1.00 89.38
ar11r2_scaffold_8610
Species: mine drainage metagenome (50%)
2 4212 bp 59.92 1.00 89.46
ar11r2_scaffold_40016
Class: Gammaproteobacteria (66.67%)
3 1445 bp 56.40 1.00 89.48
ar11r2_scaffold_10611
Class: Gammaproteobacteria (66.67%)
3 2781 bp 53.87 1.00 89.54
ar11r2_scaffold_1272
Class: Betaproteobacteria (62.5%)
8 9150 bp 57.13 1.00 89.54
ar11r2_scaffold_30540
Class: Gammaproteobacteria (66.67%)
3 1514 bp 55.02 1.00 89.56
ar11r2_scaffold_7697
Order: Chromatiales (66.67%)
3 3162 bp 55.12 1.00 89.66
ar11r2_scaffold_25764
Class: Gammaproteobacteria (80%)
5 3493 bp 54.54 1.00 89.69
ar11r2_scaffold_41051
Species: Halothiobacillus neapolitanus (66.67%)
3 1602 bp 51.87 1.00 89.70
ar11r2_scaffold_1475
Phylum: Proteobacteria (50%)
6 8296 bp 58.65 1.00 89.72
ar11r2_scaffold_5446
Class: Gammaproteobacteria (80%)
15 13227 bp 49.13 1.00 89.93
ar11r2_scaffold_9064
Order: Chromatiales (66.67%)
3 2732 bp 59.33 1.00 90.15
ar11r2_scaffold_9768
Class: Gammaproteobacteria (75%)
4 2632 bp 55.28 1.00 90.16
ar11r2_scaffold_3969
Class: Gammaproteobacteria (83.33%)
6 4442 bp 54.14 1.00 90.16
ar11r2_scaffold_5599
Class: Gammaproteobacteria (100%)
13 8834 bp 52.63 1.00 90.16
ar11r2_scaffold_3321
Class: Betaproteobacteria (60%)
5 4989 bp 56.24 1.00 90.20
ar11r2_scaffold_17833
Species: Halorhodospira halochloris (50%)
2 3166 bp 55.56 1.00 90.21
ar11r2_scaffold_14182
Class: Gammaproteobacteria (50%)
4 3491 bp 58.15 1.00 90.23
ar11r2_scaffold_3581
Order: Chromatiales (60%)
5 5279 bp 55.05 1.00 90.24
ar11r2_scaffold_19791
Class: Betaproteobacteria (50%)
4 3530 bp 57.11 1.00 90.26
ar11r2_scaffold_2375
Class: Gammaproteobacteria (80%)
10 7218 bp 53.59 1.00 90.27
ar11r2_scaffold_1749
Species: Thiothrix nivea (100%)
7 7422 bp 50.79 1.00 90.38
ar11r2_scaffold_24768
Order: Chromatiales (50%)
4 2682 bp 54.66 1.00 90.38
ar11r2_scaffold_33689
Order: Chromatiales (66.67%)
3 1917 bp 55.71 1.00 90.45
ar11r2_scaffold_21990
Species: Halothiobacillus neapolitanus (50%)
2 1594 bp 55.33 1.00 90.53
ar11r2_scaffold_3657
Class: Betaproteobacteria (75%)
4 4968 bp 58.17 1.00 90.58
ar11r2_scaffold_6847
Class: Gammaproteobacteria (80%)
5 3421 bp 55.69 1.00 90.59
ar11r2_scaffold_7968
Order: Chromatiales (50%)
4 3847 bp 57.14 1.00 90.62
ar11r2_scaffold_12419
Class: Gammaproteobacteria (62.5%)
8 2539 bp 54.47 1.00 90.63
ar11r2_scaffold_7374
Class: Betaproteobacteria (60%)
5 3442 bp 54.10 1.00 90.73
ar11r2_scaffold_27331
Class: Gammaproteobacteria (75%)
4 1801 bp 56.14 1.00 90.78
ar11r2_scaffold_15485
Domain: Bacteria (100%)
3 2048 bp 58.40 1.00 90.82
ar11r2_scaffold_42470
Species: Halothiobacillus neapolitanus (50%)
2 1426 bp 53.51 1.00 90.88
ar11r2_scaffold_7403
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 3297 bp 57.84 1.00 90.90
ar11r2_scaffold_5291 5 3852 bp 52.78 1.00 90.97
ar11r2_scaffold_10001
Order: Chromatiales (60%)
5 2871 bp 54.02 1.00 91.01
ar11r2_scaffold_7764
Species: RLO_Pseudomonas_59_9 (50%)
2 3071 bp 54.71 1.00 91.05
ar11r2_scaffold_4533
Class: Gammaproteobacteria (83.33%)
6 4279 bp 53.61 1.00 91.07
ar11r2_scaffold_6220
Class: Gammaproteobacteria (50%)
4 5107 bp 56.16 1.00 91.15
ar11r2_scaffold_17878
Order: Chromatiales (75%)
4 2273 bp 57.99 1.00 91.20
ar11r2_scaffold_7691
Order: Chromatiales (66.67%)
3 3127 bp 53.28 1.00 91.24
ar11r2_scaffold_11994
Species: Halothiobacillus neapolitanus (100%)
3 2451 bp 54.75 1.00 91.31
Displaying items 201-250 of 453 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.